* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/BayesianHybridDesign.Rcheck’
* using R Under development (unstable) (2026-03-13 r89613)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* current time: 2026-03-13 16:12:50 UTC
* checking for file ‘BayesianHybridDesign/DESCRIPTION’ ... OK
* this is package ‘BayesianHybridDesign’ version ‘0.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BayesianHybridDesign’ can be installed ... [13s/12s] OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [18s/17s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking examples with --run-donttest ... [39s/40s] ERROR
Running examples in ‘BayesianHybridDesign-Ex.R’ failed
The error most likely occurred in:

> ### Name: runCalibratedSAM
> ### Title: Run a Calibrated Simulation Using SAM Priors
> ### Aliases: runCalibratedSAM
> 
> ### ** Examples
> 
> ## No test: 
> # Example uses functions from the RBesT package
> library(RBesT)
This is RBesT version 1.9.0 (released 2026-03-13, git-sha 30cf4cd)
> 
> sim_power_pc30 <- runCalibratedSAM(
+    nsim = 100,
+    pch = 0.30,
+    delta_threshold = 0.1,
+    nche.c = 180,
+    nc.calib = 45,
+    nt.calib = 45,
+    pc.calib = 0.3,
+    typeIER.cal = 0.10,
+    nche = 180,
+    nc = 45,
+    nt = 45,
+    pc = 0.30,
+    pt = 0.50
+ )
Starting Step 1: Calibration...
Assuming default prior location   for beta: 0
Using the posterior mean from informative prior as the estimate of the treatment effect based on historical data.
Error in sort.int(x, na.last = na.last, decreasing = decreasing, ...) : 
  'x' must be atomic
Calls: runCalibratedSAM ... quantile.default -> sort -> sort.default -> sort.int
Execution halted
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/BayesianHybridDesign.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 2:37.39, 139.19 + 25.65