* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/BayesSIM.Rcheck’
* using R Under development (unstable) (2025-12-13 r89164)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* checking for file ‘BayesSIM/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘BayesSIM’ version ‘0.1.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BayesSIM’ can be installed ... [22s/23s] OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [29s/29s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking examples with --run-donttest ... [25s/25s] ERROR
Running examples in ‘BayesSIM-Ex.R’ failed
The error most likely occurred in:

> ### Name: BayesSIM
> ### Title: Integrated function for Bayesian single-index regression
> ### Aliases: BayesSIM
> 
> ### ** Examples
> 
> ## No test: 
> set.seed(123)
> n <- 100; d <- 4
> theta <- c(2, 1, 1, 1); theta <- theta / sqrt(sum(theta^2))
> f <- function(u) u^2 * exp(u)
> sigma <- 0.5
> X <- matrix(runif(n * d, -1, 1), nrow = n)
> index_vals <- as.vector(X %*% theta)
> y <- f(index_vals) + rnorm(n, 0, sigma)
> 
> # One-call version
> fit <- BayesSIM(X, y, indexprior = "sphere", link = "bspline")
Build Model
Assign samplers
Compile Model
Error in sizeIndexingBracket(<environment>, new("symbolTable", .xData = <environment>),  : 
  detected unexpected use of `(` in model code in `ARG1_mat_[, (2:x_ncol)]`. Parentheses cannot be used in indexing in NIMBLE models
Calls: BayesSIM ... exprClasses_setSizes -> eval -> eval -> sizeIndexingBracket
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [10s/10s]
 [10s/10s] OK
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/BayesSIM.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 2:41.23, 137.91 + 21.13