* using log directory ‘/data/localhost/ripley/R/packages/tests-donttest/BSCB.Rcheck’ * using R Under development (unstable) (2026-08-21 r90440) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2) GNU Fortran (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2) * running under: Fedora Linux 44 (Server Edition) * using session charset: UTF-8 * current time: 2026-08-22 15:39:05 UTC * checking for file ‘BSCB/DESCRIPTION’ ... OK * this is package ‘BSCB’ version ‘1.0.2’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... INFO Package suggested but not available for checking: ‘cmdstanr’ * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘BSCB’ can be installed ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking examples with --run-donttest ... ERROR Running examples in ‘BSCB-Ex.R’ failed The error most likely occurred in: > ### Name: compute_bscb_hmc > ### Title: Compute BSCB via Hamiltonian Monte Carlo > ### Aliases: compute_bscb_hmc > > ### ** Examples > > ## No test: > set.seed(42) > n <- 20; p <- 2 > x_seq <- seq(-5, 5, length.out = n) > X <- cbind(1, x_seq, x_seq^2) > theta_true <- c(-6, -3, 0.25) > Y <- as.numeric(X %*% theta_true + rnorm(n, sd = 0.2)) > fit <- compute_bscb_hmc( + Y = Y, X = X, V = diag(n), + a = -5, b = 5, + theta_true = theta_true, + prior_type = "normal_half_cauchy", + L = 1000, draw_num = 500 # small values for illustration only + ) Error: Package "cmdstanr" is required for HMC methods. Install with: install.packages("cmdstanr", repos = c("https://stan-dev.r-universe.dev", getOption("repos"))) Execution halted * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [108s/111s] [108s/111s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [53s/55s] OK * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * checking for new files in some other directories ... OK * DONE Status: 1 ERROR See ‘/data/localhost/ripley/R/packages/tests-donttest/BSCB.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 3:42.51, 201.90 + 8.92