* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/AquaBPsim.Rcheck’
* using R Under development (unstable) (2023-03-18 r84003)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2)
    GNU Fortran (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2)
* running under: Fedora 34 (Workstation Edition)
* using session charset: UTF-8
* checking for file ‘AquaBPsim/DESCRIPTION’ ... OK
* this is package ‘AquaBPsim’ version ‘0.0.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘AquaBPsim’ can be installed ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [12s/12s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking examples with --run-donttest ... ERROR
Running examples in ‘AquaBPsim-Ex.R’ failed
The error most likely occurred in:

> ### Name: avail_selection
> ### Title: Available as selection candidates
> ### Aliases: avail_selection
> 
> ### ** Examples
> 
> ## No test: 
> ped <- founderpopfam(Nm = 60,
+                      Nf = 60,
+                      Nm2 = 0,
+                      Nf2 = 0,
+                      Ntraits = 2,
+                      TraitsIndex = 2,
+                      Rgen = matrix(c(1.00   , 0.48,
+                                     0.48   , 1.00),
+                                  nrow = 2),
+                      Rcom = matrix(c(1.00  , 0.5,
+                                     0.5   , 1.00),
+                                  nrow = 2),
+                      Rres = matrix(c(1.00   , 0.32,
+                                     0.32   , 1.00),
+                                  nrow = 2),
+                      mean = c(50,500),
+                      a_var = c(200,8000),
+                      c_var = c(150,1000),
+                      e_var = c(250,12000))
>                      
> Mating <- randommating(gen = 0,
+                        Nfam_FS = 120)
> 
> for(fam in 1: nrow(Mating)){
+ ped <- offspringFSfam(gen = 1,
+                       No = 100,
+                       probmale = 0.5,
+                       sire = Mating$Sire[fam],
+                       dam = Mating$Dam[fam],
+                       Ntraits = 2,
+                       TraitsIndex = 2,
+                       Rgen = matrix(c(1.00   , 0.48,
+                                     0.48   , 1.00),
+                                  nrow = 2),
+                       Rcom = matrix(c(1.00  , 0.5,
+                                     0.5   , 1.00),
+                                  nrow = 2),
+                       Rres = matrix(c(1.00   , 0.32,
+                                     0.32   , 1.00),
+                                  nrow = 2),
+                       a_var = c(200,8000),
+                       c_var = c(150,1000),
+                       e_var = c(250,12000))
+ }
> 
> ped <- preselphen(gen = 1,
+                   Nenv = 2,
+                   Npresel = c(25,15),
+                   trait = 1,
+                   Ntraits = 2)
Error in xtfrm.data.frame(x) : cannot xtfrm data frames
Calls: preselphen ... lapply -> FUN -> as.vector -> xtfrm -> xtfrm.data.frame
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/AquaBPsim.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 0:57.19, 48.59 + 7.92