* installing *source* package ‘phutil’ ...
** this is package ‘phutil’ version ‘0.0.2’
** package ‘phutil’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 23.1.0-rc2’
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang-trunk/phutil/src'
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang-trunk/include" -DNDEBUG -DNO_LEGACY_NONAPI -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c bottleneck.cpp -o bottleneck.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang-trunk/include" -DNDEBUG -DNO_LEGACY_NONAPI -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c cpp11.cpp -o cpp11.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang-trunk/include" -DNDEBUG -DNO_LEGACY_NONAPI -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c diagram_parser.cpp -o diagram_parser.o
/usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang-trunk/include" -DNDEBUG -DNO_LEGACY_NONAPI -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/cpp11/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include   -fopenmp -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c wasserstein.cpp -o wasserstein.o
In file included from wasserstein.cpp:1:
In file included from ./hera/wasserstein.h:37:
In file included from ./hera/wasserstein/basic_defs_ws.h:48:
In file included from ./hera/wasserstein/../common.h:39:
./hera/wasserstein/../common/diagram_point.h:214:47: error: no member named 'fabs' in namespace 'std'; did you mean simply 'fabs'?
  214 |                     result = std::max(result, std::fabs(a[d] - b[d]));
      |                                               ^~~~~~~~~
      |                                               fabs
/usr/local/clang23/bin/../include/c++/v1/math.h:474:20: note: 'fabs' declared here
  474 | using std::__math::fabs;
      |                    ^
In file included from wasserstein.cpp:1:
In file included from ./hera/wasserstein.h:37:
In file included from ./hera/wasserstein/basic_defs_ws.h:48:
In file included from ./hera/wasserstein/../common.h:39:
./hera/wasserstein/../common/diagram_point.h:218:31: error: no member named 'fabs' in namespace 'std'; did you mean simply 'fabs'?
  218 |                     result += std::fabs(a[d] - b[d]);
      |                               ^~~~~~~~~
      |                               fabs
/usr/local/clang23/bin/../include/c++/v1/math.h:474:20: note: 'fabs' declared here
  474 | using std::__math::fabs;
      |                    ^
In file included from wasserstein.cpp:1:
In file included from ./hera/wasserstein.h:37:
In file included from ./hera/wasserstein/basic_defs_ws.h:48:
In file included from ./hera/wasserstein/../common.h:39:
./hera/wasserstein/../common/diagram_point.h:223:31: error: no member named 'pow' in namespace 'std'; did you mean simply 'pow'?
  223 |                     result += std::pow(std::fabs(a[d] - b[d]), p);
      |                               ^~~~~~~~
      |                               pow
/usr/local/clang23/bin/../include/c++/v1/math.h:499:20: note: 'pow' declared here
  499 | using std::__math::pow;
      |                    ^
In file included from wasserstein.cpp:1:
In file included from ./hera/wasserstein.h:37:
In file included from ./hera/wasserstein/basic_defs_ws.h:48:
In file included from ./hera/wasserstein/../common.h:39:
./hera/wasserstein/../common/diagram_point.h:223:40: error: no member named 'fabs' in namespace 'std'; did you mean simply 'fabs'?
  223 |                     result += std::pow(std::fabs(a[d] - b[d]), p);
      |                                        ^~~~~~~~~
      |                                        fabs
/usr/local/clang23/bin/../include/c++/v1/math.h:474:20: note: 'fabs' declared here
  474 | using std::__math::fabs;
      |                    ^
In file included from wasserstein.cpp:1:
In file included from ./hera/wasserstein.h:37:
In file included from ./hera/wasserstein/basic_defs_ws.h:48:
In file included from ./hera/wasserstein/../common.h:39:
./hera/wasserstein/../common/diagram_point.h:225:26: error: no member named 'pow' in namespace 'std'; did you mean simply 'pow'?
  225 |                 result = std::pow(result, 1.0 / p);
      |                          ^~~~~~~~
      |                          pow
/usr/local/clang23/bin/../include/c++/v1/math.h:499:20: note: 'pow' declared here
  499 | using std::__math::pow;
      |                    ^
In file included from wasserstein.cpp:1:
In file included from ./hera/wasserstein.h:37:
In file included from ./hera/wasserstein/basic_defs_ws.h:48:
In file included from ./hera/wasserstein/../common.h:39:
./hera/wasserstein/../common/diagram_point.h:239:35: error: no member named 'fabs' in namespace 'std'; did you mean simply 'fabs'?
  239 |                 result = std::max(std::fabs(a.getRealX() - b.getRealX()), std::fabs(a.getRealY() - b.getRealY()));
      |                                   ^~~~~~~~~
      |                                   fabs
/usr/local/clang23/bin/../include/c++/v1/math.h:474:20: note: 'fabs' declared here
  474 | using std::__math::fabs;
      |                    ^
In file included from wasserstein.cpp:1:
In file included from ./hera/wasserstein.h:37:
In file included from ./hera/wasserstein/basic_defs_ws.h:48:
In file included from ./hera/wasserstein/../common.h:39:
./hera/wasserstein/../common/diagram_point.h:239:75: error: no member named 'fabs' in namespace 'std'; did you mean simply 'fabs'?
  239 |                 result = std::max(std::fabs(a.getRealX() - b.getRealX()), std::fabs(a.getRealY() - b.getRealY()));
      |                                                                           ^~~~~~~~~
      |                                                                           fabs
/usr/local/clang23/bin/../include/c++/v1/math.h:474:20: note: 'fabs' declared here
  474 | using std::__math::fabs;
      |                    ^
In file included from wasserstein.cpp:1:
In file included from ./hera/wasserstein.h:37:
In file included from ./hera/wasserstein/basic_defs_ws.h:48:
In file included from ./hera/wasserstein/../common.h:39:
./hera/wasserstein/../common/diagram_point.h:241:26: error: no member named 'fabs' in namespace 'std'; did you mean simply 'fabs'?
  241 |                 result = std::fabs(a.getRealX() - b.getRealX()) + std::fabs(a.getRealY() - b.getRealY());
      |                          ^~~~~~~~~
      |                          fabs
/usr/local/clang23/bin/../include/c++/v1/math.h:474:20: note: 'fabs' declared here
  474 | using std::__math::fabs;
      |                    ^
In file included from wasserstein.cpp:1:
In file included from ./hera/wasserstein.h:37:
In file included from ./hera/wasserstein/basic_defs_ws.h:48:
In file included from ./hera/wasserstein/../common.h:39:
./hera/wasserstein/../common/diagram_point.h:241:67: error: no member named 'fabs' in namespace 'std'; did you mean simply 'fabs'?
  241 |                 result = std::fabs(a.getRealX() - b.getRealX()) + std::fabs(a.getRealY() - b.getRealY());
      |                                                                   ^~~~~~~~~
      |                                                                   fabs
/usr/local/clang23/bin/../include/c++/v1/math.h:474:20: note: 'fabs' declared here
  474 | using std::__math::fabs;
      |                    ^
In file included from wasserstein.cpp:1:
In file included from ./hera/wasserstein.h:37:
In file included from ./hera/wasserstein/basic_defs_ws.h:48:
In file included from ./hera/wasserstein/../common.h:39:
./hera/wasserstein/../common/diagram_point.h:244:26: error: no member named 'pow' in namespace 'std'; did you mean simply 'pow'?
  244 |                 result = std::pow(std::pow(std::fabs(a.getRealX() - b.getRealX()), p) + std::pow(std::fabs(a.getRealY() - b.getRealY()), p), 1.0 / p);
      |                          ^~~~~~~~
      |                          pow
/usr/local/clang23/bin/../include/c++/v1/math.h:499:20: note: 'pow' declared here
  499 | using std::__math::pow;
      |                    ^
In file included from wasserstein.cpp:1:
In file included from ./hera/wasserstein.h:37:
In file included from ./hera/wasserstein/basic_defs_ws.h:48:
In file included from ./hera/wasserstein/../common.h:39:
./hera/wasserstein/../common/diagram_point.h:244:35: error: no member named 'pow' in namespace 'std'; did you mean simply 'pow'?
  244 |                 result = std::pow(std::pow(std::fabs(a.getRealX() - b.getRealX()), p) + std::pow(std::fabs(a.getRealY() - b.getRealY()), p), 1.0 / p);
      |                                   ^~~~~~~~
      |                                   pow
/usr/local/clang23/bin/../include/c++/v1/math.h:499:20: note: 'pow' declared here
  499 | using std::__math::pow;
      |                    ^
In file included from wasserstein.cpp:1:
In file included from ./hera/wasserstein.h:37:
In file included from ./hera/wasserstein/basic_defs_ws.h:48:
In file included from ./hera/wasserstein/../common.h:39:
./hera/wasserstein/../common/diagram_point.h:244:44: error: no member named 'fabs' in namespace 'std'; did you mean simply 'fabs'?
  244 |                 result = std::pow(std::pow(std::fabs(a.getRealX() - b.getRealX()), p) + std::pow(std::fabs(a.getRealY() - b.getRealY()), p), 1.0 / p);
      |                                            ^~~~~~~~~
      |                                            fabs
/usr/local/clang23/bin/../include/c++/v1/math.h:474:20: note: 'fabs' declared here
  474 | using std::__math::fabs;
      |                    ^
In file included from wasserstein.cpp:1:
In file included from ./hera/wasserstein.h:37:
In file included from ./hera/wasserstein/basic_defs_ws.h:48:
In file included from ./hera/wasserstein/../common.h:39:
./hera/wasserstein/../common/diagram_point.h:244:89: error: no member named 'pow' in namespace 'std'; did you mean simply 'pow'?
  244 |                 result = std::pow(std::pow(std::fabs(a.getRealX() - b.getRealX()), p) + std::pow(std::fabs(a.getRealY() - b.getRealY()), p), 1.0 / p);
      |                                                                                         ^~~~~~~~
      |                                                                                         pow
/usr/local/clang23/bin/../include/c++/v1/math.h:499:20: note: 'pow' declared here
  499 | using std::__math::pow;
      |                    ^
In file included from wasserstein.cpp:1:
In file included from ./hera/wasserstein.h:37:
In file included from ./hera/wasserstein/basic_defs_ws.h:48:
In file included from ./hera/wasserstein/../common.h:39:
./hera/wasserstein/../common/diagram_point.h:244:98: error: no member named 'fabs' in namespace 'std'; did you mean simply 'fabs'?
  244 |                 result = std::pow(std::pow(std::fabs(a.getRealX() - b.getRealX()), p) + std::pow(std::fabs(a.getRealY() - b.getRealY()), p), 1.0 / p);
      |                                                                                                  ^~~~~~~~~
      |                                                                                                  fabs
/usr/local/clang23/bin/../include/c++/v1/math.h:474:20: note: 'fabs' declared here
  474 | using std::__math::fabs;
      |                    ^
In file included from wasserstein.cpp:1:
In file included from ./hera/wasserstein.h:37:
In file included from ./hera/wasserstein/basic_defs_ws.h:48:
In file included from ./hera/wasserstein/../common.h:39:
./hera/wasserstein/../common/diagram_point.h:239:40: error: call to function 'fabs' that is neither visible in the template definition nor found by argument-dependent lookup
  239 |                 result = std::max(std::fabs(a.getRealX() - b.getRealX()), std::fabs(a.getRealY() - b.getRealY()));
      |                                        ^
./hera/wasserstein/../common/diagram_point.h:253:16: note: in instantiation of member function 'hera::DistImpl<double, hera::DiagramPoint<>>::operator()' requested here
  253 |         return DistImpl<R, Pt>()(a, b, p, dim);
      |                ^
./hera/wasserstein/../common/diagram_point.h:126:24: note: in instantiation of function template specialization 'hera::dist_lp<double, hera::DiagramPoint<>>' requested here
  126 |                 return dist_lp(*this, a_proj, p, dim);
      |                        ^
./hera/wasserstein.h:333:51: note: in instantiation of member function 'hera::DiagramPoint<>::persistence_lp' requested here
  333 |             total_cost_A += std::pow(dgm_A.back().persistence_lp(params.internal_p), params.wasserstein_power);
      |                                                   ^
wasserstein.cpp:57:20: note: in instantiation of function template specialization 'hera::wasserstein_cost_detailed<std::vector<std::pair<double, double>>>' requested here
   57 |   auto res = hera::wasserstein_cost_detailed(diagramA, diagramB, params);
      |                    ^
/usr/include/bits/mathcalls.h:216:14: note: 'fabs' should be declared prior to the call site
  216 | __MATHCALLX (fabs,, (_Mdouble_ __x), (__const__));
      |              ^
In file included from wasserstein.cpp:1:
In file included from ./hera/wasserstein.h:37:
In file included from ./hera/wasserstein/basic_defs_ws.h:48:
In file included from ./hera/wasserstein/../common.h:39:
./hera/wasserstein/../common/diagram_point.h:239:80: error: call to function 'fabs' that is neither visible in the template definition nor found by argument-dependent lookup
  239 |                 result = std::max(std::fabs(a.getRealX() - b.getRealX()), std::fabs(a.getRealY() - b.getRealY()));
      |                                                                                ^
/usr/include/bits/mathcalls.h:216:14: note: 'fabs' should be declared prior to the call site
  216 | __MATHCALLX (fabs,, (_Mdouble_ __x), (__const__));
      |              ^
In file included from wasserstein.cpp:1:
In file included from ./hera/wasserstein.h:37:
In file included from ./hera/wasserstein/basic_defs_ws.h:48:
In file included from ./hera/wasserstein/../common.h:39:
./hera/wasserstein/../common/diagram_point.h:241:31: error: call to function 'fabs' that is neither visible in the template definition nor found by argument-dependent lookup
  241 |                 result = std::fabs(a.getRealX() - b.getRealX()) + std::fabs(a.getRealY() - b.getRealY());
      |                               ^
/usr/include/bits/mathcalls.h:216:14: note: 'fabs' should be declared prior to the call site
  216 | __MATHCALLX (fabs,, (_Mdouble_ __x), (__const__));
      |              ^
In file included from wasserstein.cpp:1:
In file included from ./hera/wasserstein.h:37:
In file included from ./hera/wasserstein/basic_defs_ws.h:48:
In file included from ./hera/wasserstein/../common.h:39:
./hera/wasserstein/../common/diagram_point.h:241:72: error: call to function 'fabs' that is neither visible in the template definition nor found by argument-dependent lookup
  241 |                 result = std::fabs(a.getRealX() - b.getRealX()) + std::fabs(a.getRealY() - b.getRealY());
      |                                                                        ^
/usr/include/bits/mathcalls.h:216:14: note: 'fabs' should be declared prior to the call site
  216 | __MATHCALLX (fabs,, (_Mdouble_ __x), (__const__));
      |              ^
In file included from wasserstein.cpp:1:
In file included from ./hera/wasserstein.h:37:
In file included from ./hera/wasserstein/basic_defs_ws.h:48:
In file included from ./hera/wasserstein/../common.h:39:
./hera/wasserstein/../common/diagram_point.h:244:49: error: call to function 'fabs' that is neither visible in the template definition nor found by argument-dependent lookup
  244 |                 result = std::pow(std::pow(std::fabs(a.getRealX() - b.getRealX()), p) + std::pow(std::fabs(a.getRealY() - b.getRealY()), p), 1.0 / p);
      |                                                 ^
/usr/include/bits/mathcalls.h:216:14: note: 'fabs' should be declared prior to the call site
  216 | __MATHCALLX (fabs,, (_Mdouble_ __x), (__const__));
      |              ^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
make[1]: *** [/data/localhost/ripley/R/R-clang-trunk/etc/Makeconf:197: wasserstein.o] Error 1
make[1]: Target 'all' not remade because of errors.
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang-trunk/phutil/src'
ERROR: compilation failed for package ‘phutil’
* removing ‘/data/localhost/ripley/R/packages/tests-clang-trunk/phutil.Rcheck/phutil’