* using log directory ‘/data/localhost/ripley/R/packages/tests-clang-trunk/geostatsp.Rcheck’
* using R Under development (unstable) (2026-08-08 r90378)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    clang version 23.1.0-rc2
    flang version 23.1.0-rc2
* running under: Fedora Linux 44 (Server Edition)
* using session charset: UTF-8
* current time: 2026-08-08 14:06:25 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘geostatsp/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘geostatsp’ version ‘2.0.11’
* checking package namespace information ... OK
* checking package dependencies ... INFO
Package suggested but not available for checking: ‘RandomFields’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geostatsp’ can be installed ... [27s/29s] OK
* used C compiler: ‘clang version 23.1.0-rc2’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [37s/39s] NOTE
Found calls to structure() using deprecated special names:
  geostatsp/R/maternGmrfPrec.R (.Names: 2, .Dim: 1, .Dimnames: 1)
'.Names' should be changed to 'names'.
'.Dim' should be changed to 'dim'.
'.Dimnames' should be changed to 'dimnames'.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ...Warning: elapsed-time limit of 30 minutes reached for sub-process
 [0m/30m] ERROR
Running examples in ‘geostatsp-Ex.R’ failed
The error most likely occurred in:

> ### Name: RFsimulate
> ### Title: Simulation of Random Fields
> ### Aliases: RFsimulate modelRandomFields RFsimulate RFsimulate-methods
> ###   RFsimulate,ANY,SpatRaster-method RFsimulate,numeric,SpatRaster-method
> ###   RFsimulate,numeric,SpatVector-method
> ###   RFsimulate,RMmodel,SpatVector-method
> ###   RFsimulate,RMmodel,SpatRaster-method
> ###   RFsimulate,matrix,SpatRaster-method
> ###   RFsimulate,matrix,SpatVector-method RFsimulate,data.frame,ANY-method
> ### Keywords: spatial
> 
> ### ** Examples
> 
> library('geostatsp')
> 
> # exclude this line to use the RandomFields package
> options(useRandomFields = FALSE)
> 
> model1 <- c(var=5, range=1,shape=0.5)
> 
> 
> myraster = rast(nrows=20,ncols=30,extent = ext(0,6,0,4), 
+ 	crs="+proj=utm +zone=17 +datum=NAD27 +units=m +no_defs")
> 
> set.seed(0) 
> 
> simu <- RFsimulate(model1, x=myraster, n=3)
install the RandomFields package for faster simulations
OMP: Warning #96: Cannot form a team with 28 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘RFsimulate.R’/data/localhost/ripley/R/R-clang-trunk/bin/BATCH: line 60: 1894109 CPU time limit exceeded    (core dumped) ${R_HOME}/bin/R -f ${in} ${opts} ${R_BATCH_OPTIONS} > ${out} 2>&1
 [91m/59m]
  Running ‘krige.R’ [10s/19s]
  Running ‘lgcp.R’ [9s/12s]
  Running ‘lgm.R’ [24s/31s]
  Running ‘lgmRaster.R’Warning: elapsed-time limit of 1.5 hours reached for sub-process
 [0m/90m] ERROR
Running the tests in ‘tests/RFsimulate.R’ failed.
Complete output:
  > library("geostatsp")
  Loading required package: Matrix
  Loading required package: terra
  terra 1.9.34
  > 
  > Sys.setenv(
  +   OMP_NUM_THREADS = "2",
  +   OPENBLAS_NUM_THREADS = "2",
  +   MKL_NUM_THREADS = "2",
  +   BLIS_NUM_THREADS = "2",
  +   VECLIB_MAXIMUM_THREADS = "2",   # macOS Accelerate
  +   NUMEXPR_NUM_THREADS = "2"
  + )
  > options(mc.cores = 2)
  > 
  > model <- c(var=5, range=20,shape=0.5)
  > 
  > # any old crs
  > theCrs = "+proj=utm +zone=17 +datum=NAD27 +units=m +no_defs"
  > 
  > # don't test using the randomFields package, it's currently broken on some R builds
  > options(useRandomFields = FALSE)
  > 
  >   myraster = rast(nrows=20,ncols=20,extent = ext(100,110,100,110), 
  +     crs=theCrs)
  > 
  > set.seed(0)
  > simu = RFsimulate(model = rbind(a=model, b=model+0.1), 
  +   x=myraster, n=4
  + )
  OMP: Warning #96: Cannot form a team with 28 threads, using 2 instead.
  OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
 [0m/31m]
  Running ‘likfitLgm.R’* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [9s/19s]
  Running ‘matern.R’ [7s/18s]
  Running ‘maternGmrfPrec.R’ [29s/66s] OK
* checking PDF version of manual ... [6s/14s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 2 ERRORs, 1 NOTE
See
  ‘/data/localhost/ripley/R/packages/tests-clang-trunk/geostatsp.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 2:05:34, 216.22 + 14.42
/data/localhost/ripley/R/R-clang-trunk/bin/BATCH: line 60: 586850 CPU time limit exceeded    (core dumped) ${R_HOME}/bin/R -f ${in} ${opts} ${R_BATCH_OPTIONS} > ${out} 2>&1
 [91m/54m]
  Running ‘profLlgm.R’
  Running ‘simLgcp.R’
  Running ‘stackRasterList.R’