* installing *source* package ‘fastglm’ ... ** this is package ‘fastglm’ version ‘0.1.1’ ** package ‘fastglm’ successfully unpacked and MD5 sums checked ** using staged installation ** libs specified C++17 using C++ compiler: ‘clang version 23.1.0-rc2’ using C++17 make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang-trunk/fastglm/src' /usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang-trunk/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/bigmemory/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -DNDEBUG -I"../inst/include/" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c RcppExports.cpp -o RcppExports.o /usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang-trunk/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/bigmemory/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -DNDEBUG -I"../inst/include/" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c bigmemory.cpp -o bigmemory.o /usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang-trunk/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/bigmemory/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -DNDEBUG -I"../inst/include/" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c colmin_colmax.cpp -o colmin_colmax.o In file included from RcppExports.cpp:4: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from RcppExports.cpp:4: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ /usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang-trunk/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/bigmemory/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -DNDEBUG -I"../inst/include/" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c fit_glm_dense.cpp -o fit_glm_dense.o In file included from RcppExports.cpp:4: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from fit_glm_dense.cpp:4: In file included from /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/MatrixAccessor.hpp:4: In file included from /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:9: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/mapped_region.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/interprocess_fwd.hpp:25: /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:26:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 26 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :210:69: note: expanded from here 210 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:54:1: note: '#pragma clang attribute push' regions ends here 54 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :212:8: note: expanded from here 212 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from fit_glm_dense.cpp:4: In file included from /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/MatrixAccessor.hpp:4: In file included from /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:9: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/mapped_region.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/interprocess_fwd.hpp:25: /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:26:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 26 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :210:110: note: expanded from here 210 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:54:1: note: '#pragma clang attribute push' regions ends here 54 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :212:8: note: expanded from here 212 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from fit_glm_dense.cpp:4: In file included from /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/MatrixAccessor.hpp:4: In file included from /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:9: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/mapped_region.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/interprocess_fwd.hpp:25: /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:26:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 26 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :210:136: note: expanded from here 210 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:54:1: note: '#pragma clang attribute push' regions ends here 54 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :212:8: note: expanded from here 212 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from RcppExports.cpp:4: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from bigmemory.cpp:3: In file included from ./../inst/include/bigmemory.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from bigmemory.cpp:3: In file included from ./../inst/include/bigmemory.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from bigmemory.cpp:3: In file included from ./../inst/include/bigmemory.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from fit_glm_dense.cpp:4: In file included from /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/MatrixAccessor.hpp:4: /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:62:24: error: no member named 'back_inserter' in namespace 'std' 62 | std::back_inserter(ret) ); | ^~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:75:24: error: no member named 'back_inserter' in namespace 'std' 75 | std::back_inserter(ret) ); | ^~~~~~~~~~~~~ In file included from colmin_colmax.cpp:2: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from colmin_colmax.cpp:2: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from bigmemory.cpp:3: In file included from ./../inst/include/bigmemory.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from colmin_colmax.cpp:2: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from bigmemory.cpp:4: In file included from /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/MatrixAccessor.hpp:4: In file included from /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:9: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/mapped_region.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/interprocess_fwd.hpp:25: /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:26:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 26 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :25:69: note: expanded from here 25 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:54:1: note: '#pragma clang attribute push' regions ends here 54 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :27:8: note: expanded from here 27 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from bigmemory.cpp:4: In file included from /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/MatrixAccessor.hpp:4: In file included from /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:9: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/mapped_region.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/interprocess_fwd.hpp:25: /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:26:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 26 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :25:110: note: expanded from here 25 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:54:1: note: '#pragma clang attribute push' regions ends here 54 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :27:8: note: expanded from here 27 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from bigmemory.cpp:4: In file included from /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/MatrixAccessor.hpp:4: In file included from /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:9: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/mapped_region.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/interprocess_fwd.hpp:25: /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:26:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 26 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :25:136: note: expanded from here 25 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:54:1: note: '#pragma clang attribute push' regions ends here 54 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :27:8: note: expanded from here 27 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from colmin_colmax.cpp:2: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from RcppExports.cpp:4: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:28: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:3: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Cholesky:32: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/Cholesky/LLT.h:240:14: warning: unused function template 'llt_rank_update_lower' [-Wunused-template] 240 | static Index llt_rank_update_lower(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma) | ^~~~~~~~~~~~~~~~~~~~~ In file included from RcppExports.cpp:4: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:28: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:7: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Eigenvalues:39: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:839:13: warning: unused function template 'tridiagonal_qr_step' [-Wunused-template] 839 | static void tridiagonal_qr_step(RealScalar* diag, RealScalar* subdiag, Index start, Index end, Scalar* matrixQ, Index n) | ^~~~~~~~~~~~~~~~~~~ In file included from RcppExports.cpp:4: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:55: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:18:13: warning: unused function template 'conservative_sparse_sparse_product_impl' [-Wunused-template] 18 | static void conservative_sparse_sparse_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, bool sortedInsertion = false) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:270:13: warning: unused function template 'sparse_sparse_to_dense_product_impl' [-Wunused-template] 270 | static void sparse_sparse_to_dense_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from RcppExports.cpp:4: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:56: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/SparseSparseProductWithPruning.h:20:13: warning: unused function template 'sparse_sparse_product_with_pruning_impl' [-Wunused-template] 20 | static void sparse_sparse_product_with_pruning_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, const typename ResultType::RealScalar& tolerance) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from RcppExports.cpp:4: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:27: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/OrderingMethods:66: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Amd.h:35:21: warning: unused function template 'cs_wclear' [-Wunused-template] 35 | static StorageIndex cs_wclear (StorageIndex mark, StorageIndex lemax, StorageIndex *w, StorageIndex n) | ^~~~~~~~~ In file included from RcppExports.cpp:4: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:27: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/OrderingMethods:67: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Ordering.h:16: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:501:18: warning: unused function template 'init_rows_cols' [-Wunused-template] 501 | static IndexType init_rows_cols /* returns true if OK, or false otherwise */ | ^~~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:717:13: warning: unused function template 'init_scoring' [-Wunused-template] 717 | static void init_scoring | ^~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:954:18: warning: unused function template 'find_ordering' [-Wunused-template] 954 | static IndexType find_ordering /* return the number of garbage collections */ | ^~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1566:13: warning: unused function template 'detect_super_cols' [-Wunused-template] 1566 | static void detect_super_cols | ^~~~~~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1717:18: warning: unused function template 'garbage_collection' [-Wunused-template] 1717 | static IndexType garbage_collection /* returns the new value of pfree */ | ^~~~~~~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:342:13: warning: unused function template 'compute_ordering' [-Wunused-template] 342 | static bool compute_ordering(IndexType n_row, IndexType n_col, IndexType Alen, IndexType *A, IndexType *p, double knobs[NKnobs], IndexType stats[NStats]) | ^~~~~~~~~~~~~~~~ In file included from colmin_colmax.cpp:2: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:28: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:3: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Cholesky:32: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/Cholesky/LLT.h:240:14: warning: unused function template 'llt_rank_update_lower' [-Wunused-template] 240 | static Index llt_rank_update_lower(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma) | ^~~~~~~~~~~~~~~~~~~~~ In file included from colmin_colmax.cpp:2: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:28: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:7: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Eigenvalues:39: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:839:13: warning: unused function template 'tridiagonal_qr_step' [-Wunused-template] 839 | static void tridiagonal_qr_step(RealScalar* diag, RealScalar* subdiag, Index start, Index end, Scalar* matrixQ, Index n) | ^~~~~~~~~~~~~~~~~~~ In file included from colmin_colmax.cpp:2: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:55: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:18:13: warning: unused function template 'conservative_sparse_sparse_product_impl' [-Wunused-template] 18 | static void conservative_sparse_sparse_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, bool sortedInsertion = false) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:270:13: warning: unused function template 'sparse_sparse_to_dense_product_impl' [-Wunused-template] 270 | static void sparse_sparse_to_dense_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from colmin_colmax.cpp:2: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:56: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/SparseSparseProductWithPruning.h:20:13: warning: unused function template 'sparse_sparse_product_with_pruning_impl' [-Wunused-template] 20 | static void sparse_sparse_product_with_pruning_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, const typename ResultType::RealScalar& tolerance) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from colmin_colmax.cpp:2: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:27: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/OrderingMethods:66: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Amd.h:35:21: warning: unused function template 'cs_wclear' [-Wunused-template] 35 | static StorageIndex cs_wclear (StorageIndex mark, StorageIndex lemax, StorageIndex *w, StorageIndex n) | ^~~~~~~~~ In file included from colmin_colmax.cpp:2: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:27: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/OrderingMethods:67: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Ordering.h:16: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:501:18: warning: unused function template 'init_rows_cols' [-Wunused-template] 501 | static IndexType init_rows_cols /* returns true if OK, or false otherwise */ | ^~~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:717:13: warning: unused function template 'init_scoring' [-Wunused-template] 717 | static void init_scoring | ^~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:954:18: warning: unused function template 'find_ordering' [-Wunused-template] 954 | static IndexType find_ordering /* return the number of garbage collections */ | ^~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1566:13: warning: unused function template 'detect_super_cols' [-Wunused-template] 1566 | static void detect_super_cols | ^~~~~~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1717:18: warning: unused function template 'garbage_collection' [-Wunused-template] 1717 | static IndexType garbage_collection /* returns the new value of pfree */ | ^~~~~~~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:342:13: warning: unused function template 'compute_ordering' [-Wunused-template] 342 | static bool compute_ordering(IndexType n_row, IndexType n_col, IndexType Alen, IndexType *A, IndexType *p, double knobs[NKnobs], IndexType stats[NStats]) | ^~~~~~~~~~~~~~~~ 17 warnings generated. 17 warnings generated. /usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang-trunk/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/bigmemory/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -DNDEBUG -I"../inst/include/" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c fit_glm_firth.cpp -o fit_glm_firth.o In file included from fit_glm_dense.cpp:8: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from fit_glm_dense.cpp:8: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from fit_glm_dense.cpp:8: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from fit_glm_dense.cpp:8: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from bigmemory.cpp:3: In file included from ./../inst/include/bigmemory.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:28: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:3: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Cholesky:32: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/Cholesky/LLT.h:240:14: warning: unused function template 'llt_rank_update_lower' [-Wunused-template] 240 | static Index llt_rank_update_lower(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma) | ^~~~~~~~~~~~~~~~~~~~~ In file included from bigmemory.cpp:3: In file included from ./../inst/include/bigmemory.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:28: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:7: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Eigenvalues:39: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:839:13: warning: unused function template 'tridiagonal_qr_step' [-Wunused-template] 839 | static void tridiagonal_qr_step(RealScalar* diag, RealScalar* subdiag, Index start, Index end, Scalar* matrixQ, Index n) | ^~~~~~~~~~~~~~~~~~~ In file included from bigmemory.cpp:3: In file included from ./../inst/include/bigmemory.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:55: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:18:13: warning: unused function template 'conservative_sparse_sparse_product_impl' [-Wunused-template] 18 | static void conservative_sparse_sparse_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, bool sortedInsertion = false) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:270:13: warning: unused function template 'sparse_sparse_to_dense_product_impl' [-Wunused-template] 270 | static void sparse_sparse_to_dense_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from bigmemory.cpp:3: In file included from ./../inst/include/bigmemory.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:56: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/SparseSparseProductWithPruning.h:20:13: warning: unused function template 'sparse_sparse_product_with_pruning_impl' [-Wunused-template] 20 | static void sparse_sparse_product_with_pruning_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, const typename ResultType::RealScalar& tolerance) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from bigmemory.cpp:3: In file included from ./../inst/include/bigmemory.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:27: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/OrderingMethods:66: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Amd.h:35:21: warning: unused function template 'cs_wclear' [-Wunused-template] 35 | static StorageIndex cs_wclear (StorageIndex mark, StorageIndex lemax, StorageIndex *w, StorageIndex n) | ^~~~~~~~~ In file included from bigmemory.cpp:3: In file included from ./../inst/include/bigmemory.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:27: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/OrderingMethods:67: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Ordering.h:16: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:501:18: warning: unused function template 'init_rows_cols' [-Wunused-template] 501 | static IndexType init_rows_cols /* returns true if OK, or false otherwise */ | ^~~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:717:13: warning: unused function template 'init_scoring' [-Wunused-template] 717 | static void init_scoring | ^~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:954:18: warning: unused function template 'find_ordering' [-Wunused-template] 954 | static IndexType find_ordering /* return the number of garbage collections */ | ^~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1566:13: warning: unused function template 'detect_super_cols' [-Wunused-template] 1566 | static void detect_super_cols | ^~~~~~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1717:18: warning: unused function template 'garbage_collection' [-Wunused-template] 1717 | static IndexType garbage_collection /* returns the new value of pfree */ | ^~~~~~~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:342:13: warning: unused function template 'compute_ordering' [-Wunused-template] 342 | static bool compute_ordering(IndexType n_row, IndexType n_col, IndexType Alen, IndexType *A, IndexType *p, double knobs[NKnobs], IndexType stats[NStats]) | ^~~~~~~~~~~~~~~~ bigmemory.cpp:280:64: warning: unused typedef 'MatrixXshort' [-Wunused-local-typedef] 280 | typedef Eigen::Matrix MatrixXshort; | ^ bigmemory.cpp:282:51: warning: unused typedef 'Vectorshort' [-Wunused-local-typedef] 282 | typedef Eigen::Matrix Vectorshort; | ^ bigmemory.cpp:279:63: warning: unused typedef 'MatrixXchar' [-Wunused-local-typedef] 279 | typedef Eigen::Matrix MatrixXchar; | ^ bigmemory.cpp:281:50: warning: unused typedef 'Vectorchar' [-Wunused-local-typedef] 281 | typedef Eigen::Matrix Vectorchar; | ^ bigmemory.cpp:285:25: warning: unused typedef 'MapVecf' [-Wunused-local-typedef] 285 | typedef Map MapVecf; | ^ bigmemory.cpp:349:63: warning: unused typedef 'MatrixXchar' [-Wunused-local-typedef] 349 | typedef Eigen::Matrix MatrixXchar; | ^ bigmemory.cpp:355:25: warning: unused typedef 'MapVecf' [-Wunused-local-typedef] 355 | typedef Map MapVecf; | ^ bigmemory.cpp:351:50: warning: unused typedef 'Vectorchar' [-Wunused-local-typedef] 351 | typedef Eigen::Matrix Vectorchar; | ^ bigmemory.cpp:352:51: warning: unused typedef 'Vectorshort' [-Wunused-local-typedef] 352 | typedef Eigen::Matrix Vectorshort; | ^ bigmemory.cpp:350:64: warning: unused typedef 'MatrixXshort' [-Wunused-local-typedef] 350 | typedef Eigen::Matrix MatrixXshort; | ^ /usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang-trunk/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/bigmemory/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -DNDEBUG -I"../inst/include/" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c fit_glm_hurdle.cpp -o fit_glm_hurdle.o In file included from fit_glm_firth.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from fit_glm_firth.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from fit_glm_firth.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from fit_glm_firth.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 30 warnings generated. In file included from fit_glm_hurdle.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from fit_glm_hurdle.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from fit_glm_hurdle.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from fit_glm_hurdle.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from fit_glm_hurdle.cpp:5: In file included from ./../inst/include/trunc_count.h:29: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/special_functions/digamma.hpp:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/constants/constants.hpp:18: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/tools/convert_from_string.hpp:23: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65: /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 29 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :150:69: note: expanded from here 150 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here 61 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :152:8: note: expanded from here 152 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from fit_glm_hurdle.cpp:5: In file included from ./../inst/include/trunc_count.h:29: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/special_functions/digamma.hpp:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/constants/constants.hpp:18: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/tools/convert_from_string.hpp:23: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65: /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 29 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :150:110: note: expanded from here 150 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here 61 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :152:8: note: expanded from here 152 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from fit_glm_hurdle.cpp:5: In file included from ./../inst/include/trunc_count.h:29: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/special_functions/digamma.hpp:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/constants/constants.hpp:18: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/tools/convert_from_string.hpp:23: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65: /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 29 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :150:136: note: expanded from here 150 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here 61 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :152:8: note: expanded from here 152 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ /usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang-trunk/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/bigmemory/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -DNDEBUG -I"../inst/include/" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c fit_glm_nb.cpp -o fit_glm_nb.o 8 warnings and 2 errors generated. make[1]: *** [/data/localhost/ripley/R/R-clang-trunk/etc/Makeconf:197: fit_glm_dense.o] Error 1 In file included from fit_glm_nb.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from fit_glm_nb.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from fit_glm_nb.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from fit_glm_nb.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from fit_glm_firth.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:28: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:3: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Cholesky:32: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/Cholesky/LLT.h:240:14: warning: unused function template 'llt_rank_update_lower' [-Wunused-template] 240 | static Index llt_rank_update_lower(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma) | ^~~~~~~~~~~~~~~~~~~~~ In file included from fit_glm_firth.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:28: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:7: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Eigenvalues:39: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:839:13: warning: unused function template 'tridiagonal_qr_step' [-Wunused-template] 839 | static void tridiagonal_qr_step(RealScalar* diag, RealScalar* subdiag, Index start, Index end, Scalar* matrixQ, Index n) | ^~~~~~~~~~~~~~~~~~~ In file included from fit_glm_firth.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:55: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:18:13: warning: unused function template 'conservative_sparse_sparse_product_impl' [-Wunused-template] 18 | static void conservative_sparse_sparse_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, bool sortedInsertion = false) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:270:13: warning: unused function template 'sparse_sparse_to_dense_product_impl' [-Wunused-template] 270 | static void sparse_sparse_to_dense_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from fit_glm_firth.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:56: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/SparseSparseProductWithPruning.h:20:13: warning: unused function template 'sparse_sparse_product_with_pruning_impl' [-Wunused-template] 20 | static void sparse_sparse_product_with_pruning_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, const typename ResultType::RealScalar& tolerance) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from fit_glm_firth.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:27: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/OrderingMethods:66: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Amd.h:35:21: warning: unused function template 'cs_wclear' [-Wunused-template] 35 | static StorageIndex cs_wclear (StorageIndex mark, StorageIndex lemax, StorageIndex *w, StorageIndex n) | ^~~~~~~~~ In file included from fit_glm_firth.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:27: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/OrderingMethods:67: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Ordering.h:16: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:501:18: warning: unused function template 'init_rows_cols' [-Wunused-template] 501 | static IndexType init_rows_cols /* returns true if OK, or false otherwise */ | ^~~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:717:13: warning: unused function template 'init_scoring' [-Wunused-template] 717 | static void init_scoring | ^~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:954:18: warning: unused function template 'find_ordering' [-Wunused-template] 954 | static IndexType find_ordering /* return the number of garbage collections */ | ^~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1566:13: warning: unused function template 'detect_super_cols' [-Wunused-template] 1566 | static void detect_super_cols | ^~~~~~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1717:18: warning: unused function template 'garbage_collection' [-Wunused-template] 1717 | static IndexType garbage_collection /* returns the new value of pfree */ | ^~~~~~~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:342:13: warning: unused function template 'compute_ordering' [-Wunused-template] 342 | static bool compute_ordering(IndexType n_row, IndexType n_col, IndexType Alen, IndexType *A, IndexType *p, double knobs[NKnobs], IndexType stats[NStats]) | ^~~~~~~~~~~~~~~~ In file included from fit_glm_nb.cpp:5: In file included from ./../inst/include/nb_theta.h:13: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/special_functions/digamma.hpp:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/constants/constants.hpp:18: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/tools/convert_from_string.hpp:23: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65: /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 29 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :150:69: note: expanded from here 150 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here 61 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :152:8: note: expanded from here 152 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from fit_glm_nb.cpp:5: In file included from ./../inst/include/nb_theta.h:13: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/special_functions/digamma.hpp:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/constants/constants.hpp:18: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/tools/convert_from_string.hpp:23: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65: /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 29 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :150:110: note: expanded from here 150 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here 61 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :152:8: note: expanded from here 152 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from fit_glm_nb.cpp:5: In file included from ./../inst/include/nb_theta.h:13: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/special_functions/digamma.hpp:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/constants/constants.hpp:18: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/tools/convert_from_string.hpp:23: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65: /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 29 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :150:136: note: expanded from here 150 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here 61 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :152:8: note: expanded from here 152 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from fit_glm_hurdle.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:28: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:3: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Cholesky:32: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/Cholesky/LLT.h:240:14: warning: unused function template 'llt_rank_update_lower' [-Wunused-template] 240 | static Index llt_rank_update_lower(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma) | ^~~~~~~~~~~~~~~~~~~~~ In file included from fit_glm_hurdle.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:28: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:7: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Eigenvalues:39: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:839:13: warning: unused function template 'tridiagonal_qr_step' [-Wunused-template] 839 | static void tridiagonal_qr_step(RealScalar* diag, RealScalar* subdiag, Index start, Index end, Scalar* matrixQ, Index n) | ^~~~~~~~~~~~~~~~~~~ In file included from fit_glm_hurdle.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:55: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:18:13: warning: unused function template 'conservative_sparse_sparse_product_impl' [-Wunused-template] 18 | static void conservative_sparse_sparse_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, bool sortedInsertion = false) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:270:13: warning: unused function template 'sparse_sparse_to_dense_product_impl' [-Wunused-template] 270 | static void sparse_sparse_to_dense_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from fit_glm_hurdle.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:56: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/SparseSparseProductWithPruning.h:20:13: warning: unused function template 'sparse_sparse_product_with_pruning_impl' [-Wunused-template] 20 | static void sparse_sparse_product_with_pruning_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, const typename ResultType::RealScalar& tolerance) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from fit_glm_hurdle.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:27: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/OrderingMethods:66: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Amd.h:35:21: warning: unused function template 'cs_wclear' [-Wunused-template] 35 | static StorageIndex cs_wclear (StorageIndex mark, StorageIndex lemax, StorageIndex *w, StorageIndex n) | ^~~~~~~~~ In file included from fit_glm_hurdle.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:27: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/OrderingMethods:67: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Ordering.h:16: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:501:18: warning: unused function template 'init_rows_cols' [-Wunused-template] 501 | static IndexType init_rows_cols /* returns true if OK, or false otherwise */ | ^~~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:717:13: warning: unused function template 'init_scoring' [-Wunused-template] 717 | static void init_scoring | ^~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:954:18: warning: unused function template 'find_ordering' [-Wunused-template] 954 | static IndexType find_ordering /* return the number of garbage collections */ | ^~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1566:13: warning: unused function template 'detect_super_cols' [-Wunused-template] 1566 | static void detect_super_cols | ^~~~~~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1717:18: warning: unused function template 'garbage_collection' [-Wunused-template] 1717 | static IndexType garbage_collection /* returns the new value of pfree */ | ^~~~~~~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:342:13: warning: unused function template 'compute_ordering' [-Wunused-template] 342 | static bool compute_ordering(IndexType n_row, IndexType n_col, IndexType Alen, IndexType *A, IndexType *p, double knobs[NKnobs], IndexType stats[NStats]) | ^~~~~~~~~~~~~~~~ /usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang-trunk/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/bigmemory/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -DNDEBUG -I"../inst/include/" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c fit_glm_zi.cpp -o fit_glm_zi.o In file included from fit_glm_zi.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from fit_glm_zi.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from fit_glm_zi.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from fit_glm_zi.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ /usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang-trunk/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/bigmemory/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -DNDEBUG -I"../inst/include/" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c fit_streaming_glm.cpp -o fit_streaming_glm.o In file included from fit_glm_zi.cpp:5: In file included from ./../inst/include/nb_theta.h:13: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/special_functions/digamma.hpp:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/constants/constants.hpp:18: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/tools/convert_from_string.hpp:23: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65: /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 29 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :150:69: note: expanded from here 150 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here 61 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :152:8: note: expanded from here 152 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from fit_glm_zi.cpp:5: In file included from ./../inst/include/nb_theta.h:13: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/special_functions/digamma.hpp:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/constants/constants.hpp:18: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/tools/convert_from_string.hpp:23: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65: /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 29 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :150:110: note: expanded from here 150 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here 61 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :152:8: note: expanded from here 152 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from fit_glm_zi.cpp:5: In file included from ./../inst/include/nb_theta.h:13: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/special_functions/digamma.hpp:22: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/constants/constants.hpp:18: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/math/tools/convert_from_string.hpp:23: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65: /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 29 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :150:136: note: expanded from here 150 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here 61 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :152:8: note: expanded from here 152 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from fit_streaming_glm.cpp:4: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from fit_streaming_glm.cpp:4: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from fit_streaming_glm.cpp:4: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from fit_streaming_glm.cpp:4: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ fit_glm_zi.cpp:494:12: warning: unused variable 'll_prev' [-Wunused-variable] 494 | double ll_prev = ll; | ^~~~~~~ In file included from fit_glm_nb.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:28: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:3: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Cholesky:32: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/Cholesky/LLT.h:240:14: warning: unused function template 'llt_rank_update_lower' [-Wunused-template] 240 | static Index llt_rank_update_lower(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma) | ^~~~~~~~~~~~~~~~~~~~~ In file included from fit_glm_nb.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:28: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:7: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Eigenvalues:39: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:839:13: warning: unused function template 'tridiagonal_qr_step' [-Wunused-template] 839 | static void tridiagonal_qr_step(RealScalar* diag, RealScalar* subdiag, Index start, Index end, Scalar* matrixQ, Index n) | ^~~~~~~~~~~~~~~~~~~ In file included from fit_glm_nb.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:55: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:18:13: warning: unused function template 'conservative_sparse_sparse_product_impl' [-Wunused-template] 18 | static void conservative_sparse_sparse_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, bool sortedInsertion = false) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:270:13: warning: unused function template 'sparse_sparse_to_dense_product_impl' [-Wunused-template] 270 | static void sparse_sparse_to_dense_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from fit_glm_nb.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:56: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/SparseSparseProductWithPruning.h:20:13: warning: unused function template 'sparse_sparse_product_with_pruning_impl' [-Wunused-template] 20 | static void sparse_sparse_product_with_pruning_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, const typename ResultType::RealScalar& tolerance) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from fit_glm_nb.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:27: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/OrderingMethods:66: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Amd.h:35:21: warning: unused function template 'cs_wclear' [-Wunused-template] 35 | static StorageIndex cs_wclear (StorageIndex mark, StorageIndex lemax, StorageIndex *w, StorageIndex n) | ^~~~~~~~~ In file included from fit_glm_nb.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:27: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/OrderingMethods:67: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Ordering.h:16: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:501:18: warning: unused function template 'init_rows_cols' [-Wunused-template] 501 | static IndexType init_rows_cols /* returns true if OK, or false otherwise */ | ^~~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:717:13: warning: unused function template 'init_scoring' [-Wunused-template] 717 | static void init_scoring | ^~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:954:18: warning: unused function template 'find_ordering' [-Wunused-template] 954 | static IndexType find_ordering /* return the number of garbage collections */ | ^~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1566:13: warning: unused function template 'detect_super_cols' [-Wunused-template] 1566 | static void detect_super_cols | ^~~~~~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1717:18: warning: unused function template 'garbage_collection' [-Wunused-template] 1717 | static IndexType garbage_collection /* returns the new value of pfree */ | ^~~~~~~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:342:13: warning: unused function template 'compute_ordering' [-Wunused-template] 342 | static bool compute_ordering(IndexType n_row, IndexType n_col, IndexType Alen, IndexType *A, IndexType *p, double knobs[NKnobs], IndexType stats[NStats]) | ^~~~~~~~~~~~~~~~ In file included from fit_streaming_glm.cpp:4: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:28: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:3: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Cholesky:32: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/Cholesky/LLT.h:240:14: warning: unused function template 'llt_rank_update_lower' [-Wunused-template] 240 | static Index llt_rank_update_lower(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma) | ^~~~~~~~~~~~~~~~~~~~~ In file included from fit_streaming_glm.cpp:4: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:28: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:7: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Eigenvalues:39: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:839:13: warning: unused function template 'tridiagonal_qr_step' [-Wunused-template] 839 | static void tridiagonal_qr_step(RealScalar* diag, RealScalar* subdiag, Index start, Index end, Scalar* matrixQ, Index n) | ^~~~~~~~~~~~~~~~~~~ In file included from fit_streaming_glm.cpp:4: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:55: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:18:13: warning: unused function template 'conservative_sparse_sparse_product_impl' [-Wunused-template] 18 | static void conservative_sparse_sparse_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, bool sortedInsertion = false) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:270:13: warning: unused function template 'sparse_sparse_to_dense_product_impl' [-Wunused-template] 270 | static void sparse_sparse_to_dense_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from fit_streaming_glm.cpp:4: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:56: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/SparseSparseProductWithPruning.h:20:13: warning: unused function template 'sparse_sparse_product_with_pruning_impl' [-Wunused-template] 20 | static void sparse_sparse_product_with_pruning_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, const typename ResultType::RealScalar& tolerance) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from fit_streaming_glm.cpp:4: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:27: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/OrderingMethods:66: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Amd.h:35:21: warning: unused function template 'cs_wclear' [-Wunused-template] 35 | static StorageIndex cs_wclear (StorageIndex mark, StorageIndex lemax, StorageIndex *w, StorageIndex n) | ^~~~~~~~~ In file included from fit_streaming_glm.cpp:4: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:27: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/OrderingMethods:67: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Ordering.h:16: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:501:18: warning: unused function template 'init_rows_cols' [-Wunused-template] 501 | static IndexType init_rows_cols /* returns true if OK, or false otherwise */ | ^~~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:717:13: warning: unused function template 'init_scoring' [-Wunused-template] 717 | static void init_scoring | ^~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:954:18: warning: unused function template 'find_ordering' [-Wunused-template] 954 | static IndexType find_ordering /* return the number of garbage collections */ | ^~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1566:13: warning: unused function template 'detect_super_cols' [-Wunused-template] 1566 | static void detect_super_cols | ^~~~~~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1717:18: warning: unused function template 'garbage_collection' [-Wunused-template] 1717 | static IndexType garbage_collection /* returns the new value of pfree */ | ^~~~~~~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:342:13: warning: unused function template 'compute_ordering' [-Wunused-template] 342 | static bool compute_ordering(IndexType n_row, IndexType n_col, IndexType Alen, IndexType *A, IndexType *p, double knobs[NKnobs], IndexType stats[NStats]) | ^~~~~~~~~~~~~~~~ 17 warnings generated. 17 warnings generated. 20 warnings generated. In file included from fit_glm_zi.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:28: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:3: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Cholesky:32: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/Cholesky/LLT.h:240:14: warning: unused function template 'llt_rank_update_lower' [-Wunused-template] 240 | static Index llt_rank_update_lower(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma) | ^~~~~~~~~~~~~~~~~~~~~ In file included from fit_glm_zi.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:28: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Dense:7: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Eigenvalues:39: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:839:13: warning: unused function template 'tridiagonal_qr_step' [-Wunused-template] 839 | static void tridiagonal_qr_step(RealScalar* diag, RealScalar* subdiag, Index start, Index end, Scalar* matrixQ, Index n) | ^~~~~~~~~~~~~~~~~~~ In file included from fit_glm_zi.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:55: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:18:13: warning: unused function template 'conservative_sparse_sparse_product_impl' [-Wunused-template] 18 | static void conservative_sparse_sparse_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, bool sortedInsertion = false) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:270:13: warning: unused function template 'sparse_sparse_to_dense_product_impl' [-Wunused-template] 270 | static void sparse_sparse_to_dense_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from fit_glm_zi.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:56: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/SparseSparseProductWithPruning.h:20:13: warning: unused function template 'sparse_sparse_product_with_pruning_impl' [-Wunused-template] 20 | static void sparse_sparse_product_with_pruning_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, const typename ResultType::RealScalar& tolerance) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from fit_glm_zi.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:27: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/OrderingMethods:66: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Amd.h:35:21: warning: unused function template 'cs_wclear' [-Wunused-template] 35 | static StorageIndex cs_wclear (StorageIndex mark, StorageIndex lemax, StorageIndex *w, StorageIndex n) | ^~~~~~~~~ In file included from fit_glm_zi.cpp:4: In file included from ./../inst/include/glm.h:4: In file included from ./../inst/include/glm_base.h:5: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:27: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/OrderingMethods:67: In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Ordering.h:16: /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:501:18: warning: unused function template 'init_rows_cols' [-Wunused-template] 501 | static IndexType init_rows_cols /* returns true if OK, or false otherwise */ | ^~~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:717:13: warning: unused function template 'init_scoring' [-Wunused-template] 717 | static void init_scoring | ^~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:954:18: warning: unused function template 'find_ordering' [-Wunused-template] 954 | static IndexType find_ordering /* return the number of garbage collections */ | ^~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1566:13: warning: unused function template 'detect_super_cols' [-Wunused-template] 1566 | static void detect_super_cols | ^~~~~~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1717:18: warning: unused function template 'garbage_collection' [-Wunused-template] 1717 | static IndexType garbage_collection /* returns the new value of pfree */ | ^~~~~~~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:342:13: warning: unused function template 'compute_ordering' [-Wunused-template] 342 | static bool compute_ordering(IndexType n_row, IndexType n_col, IndexType Alen, IndexType *A, IndexType *p, double knobs[NKnobs], IndexType stats[NStats]) | ^~~~~~~~~~~~~~~~ 20 warnings generated. 21 warnings generated. make[1]: Target 'all' not remade because of errors. make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang-trunk/fastglm/src' ERROR: compilation failed for package ‘fastglm’ * removing ‘/data/localhost/ripley/R/packages/tests-clang-trunk/fastglm.Rcheck/fastglm’