* using log directory ‘/data/localhost/ripley/R/packages/tests-clang-trunk/eyeris.Rcheck’ * using R Under development (unstable) (2026-09-03 r90476) * using platform: x86_64-pc-linux-gnu * R was compiled by clang version 23.1.0 flang version 23.1.0 * running under: Fedora Linux 44 (Server Edition) * using session charset: UTF-8 * current time: 2026-09-03 08:00:47 UTC * using option ‘--no-stop-on-test-error’ * checking for file ‘eyeris/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘eyeris’ version ‘3.3.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... INFO Package suggested but not available for checking: ‘duckdb’ Imports includes 23 non-default packages. Importing from so many packages makes the package vulnerable to any of them becoming unavailable. Move as many as possible to Suggests and use conditionally. * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘eyeris’ can be installed ... [10s/12s] OK * checking installed package size ... INFO installed size is 6.9Mb sub-directories of 1Mb or more: doc 3.0Mb help 1.3Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [23s/29s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [46s/56s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [34s/42s] [34s/42s] ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(eyeris) eyeris v3.3.0 - Lumpy Space Princess ꒰•ᴗ•｡꒱۶ Welcome! Type ?`eyeris` to get started. ** DuckDB not found. Database features are disabled. => To install DuckDB: - macOS: install.packages('duckdb', type = 'binary') - Linux: use system packages (e.g., `sudo apt-get install r-cran-duckdb`) or install.packages('duckdb') if binaries are available - Windows: install.packages('duckdb') Once installed, restart R and reload eyeris to enable database storage (bidsify(..., db_enabled = TRUE) and eyeris_db_* functions). > > test_check("eyeris") ! [2026-09-03 09:03:10] [WARN] Interpolation now leaves gaps longer than 250 ms as `NA` instead of interpolating across them (following Kret & Sjak-Shie, 2018). This is a change in default behavior from eyeris <= 3.2.0 and may affect your results. To restore the previous behavior, set `interpolate = list(max_gap_ms = Inf)` in `glassbox()` (or `max_gap_ms = Inf` in `interpolate()`). ** DuckDB not found. Database features are disabled. => To install DuckDB: - macOS: install.packages('duckdb', type = 'binary') - Linux: use system packages (e.g., `sudo apt-get install r-cran-duckdb`) or install.packages('duckdb') if binaries are available - Windows: install.packages('duckdb') Once installed, restart R and reload eyeris to enable database storage (bidsify(..., db_enabled = TRUE) and eyeris_db_* functions). Saving _problems/test-chunked-processing-142.R v [2026-09-03 09:03:16] [OKAY] Running eyeris::load_asc() v [2026-09-03 09:03:16] [OKAY] Running eyeris::resample() i [2026-09-03 09:03:16] [INFO] Processing block: block_1 v [2026-09-03 09:03:16] [OKAY] Running eyeris::deblink() for block_1 v [2026-09-03 09:03:16] [OKAY] Running eyeris::detransient() for block_1 v [2026-09-03 09:03:16] [OKAY] Running eyeris::interpolate() for block_1 ! [2026-09-03 09:03:16] [WARN] Interpolation now leaves gaps longer than 250 ms as `NA` instead of interpolating across them (following Kret & Sjak-Shie, 2018). This is a change in default behavior from eyeris <= 3.2.0 and may affect your results. To restore the previous behavior, set `interpolate = list(max_gap_ms = Inf)` in `glassbox()` (or `max_gap_ms = Inf` in `interpolate()`). v [2026-09-03 09:03:16] [OKAY] Running eyeris::lpfilt() for block_1 ! [2026-09-03 09:03:16] [WARN] Skipping eyeris::downsample() for block_1 ! [2026-09-03 09:03:16] [WARN] Skipping eyeris::bin() for block_1 ! [2026-09-03 09:03:16] [WARN] Skipping eyeris::detrend() for block_1 v [2026-09-03 09:03:16] [OKAY] Running eyeris::zscore() for block_1 i [2026-09-03 09:03:16] [INFO] Block processing summary: i [2026-09-03 09:03:16] [INFO] block_1: OK (steps: 6, latest: pupil_raw_deblink_detransient_interpolate_lpfilt_z) v [2026-09-03 09:03:16] [OKAY] Running eyeris::summarize_confounds() v [2026-09-03 09:03:16] [OKAY] Running eyeris::load_asc() v [2026-09-03 09:03:17] [OKAY] Running eyeris::resample() i [2026-09-03 09:03:17] [INFO] Processing block: block_1 v [2026-09-03 09:03:17] [OKAY] Running eyeris::deblink() for block_1 v [2026-09-03 09:03:17] [OKAY] Running eyeris::detransient() for block_1 v [2026-09-03 09:03:17] [OKAY] Running eyeris::interpolate() for block_1 ! [2026-09-03 09:03:17] [WARN] Interpolation now leaves gaps longer than 250 ms as `NA` instead of interpolating across them (following Kret & Sjak-Shie, 2018). This is a change in default behavior from eyeris <= 3.2.0 and may affect your results. To restore the previous behavior, set `interpolate = list(max_gap_ms = Inf)` in `glassbox()` (or `max_gap_ms = Inf` in `interpolate()`). v [2026-09-03 09:03:17] [OKAY] Running eyeris::lpfilt() for block_1 ! [2026-09-03 09:03:17] [WARN] Skipping eyeris::downsample() for block_1 ! [2026-09-03 09:03:17] [WARN] Skipping eyeris::bin() for block_1 ! [2026-09-03 09:03:17] [WARN] Skipping eyeris::detrend() for block_1 v [2026-09-03 09:03:17] [OKAY] Running eyeris::zscore() for block_1 i [2026-09-03 09:03:17] [INFO] Block processing summary: i [2026-09-03 09:03:17] [INFO] block_1: OK (steps: 6, latest: pupil_raw_deblink_detransient_interpolate_lpfilt_z) v [2026-09-03 09:03:17] [OKAY] Running eyeris::summarize_confounds() v [2026-09-03 09:03:17] [OKAY] Running eyeris::load_asc() v [2026-09-03 09:03:17] [OKAY] Running eyeris::resample() i [2026-09-03 09:03:17] [INFO] Processing block: block_1 v [2026-09-03 09:03:17] [OKAY] Running eyeris::deblink() for block_1 v [2026-09-03 09:03:17] [OKAY] Running eyeris::detransient() for block_1 v [2026-09-03 09:03:17] [OKAY] Running eyeris::interpolate() for block_1 ! [2026-09-03 09:03:17] [WARN] Interpolation now leaves gaps longer than 250 ms as `NA` instead of interpolating across them (following Kret & Sjak-Shie, 2018). This is a change in default behavior from eyeris <= 3.2.0 and may affect your results. To restore the previous behavior, set `interpolate = list(max_gap_ms = Inf)` in `glassbox()` (or `max_gap_ms = Inf` in `interpolate()`). v [2026-09-03 09:03:17] [OKAY] Running eyeris::lpfilt() for block_1 ! [2026-09-03 09:03:17] [WARN] Skipping eyeris::downsample() for block_1 ! [2026-09-03 09:03:17] [WARN] Skipping eyeris::bin() for block_1 ! [2026-09-03 09:03:17] [WARN] Skipping eyeris::detrend() for block_1 v [2026-09-03 09:03:17] [OKAY] Running eyeris::zscore() for block_1 i [2026-09-03 09:03:17] [INFO] Block processing summary: i [2026-09-03 09:03:17] [INFO] block_1: OK (steps: 6, latest: pupil_raw_deblink_detransient_interpolate_lpfilt_z) v [2026-09-03 09:03:17] [OKAY] Running eyeris::summarize_confounds() ! [2026-09-03 09:03:23] [WARN] Interpolation now leaves gaps longer than 250 ms as `NA` instead of interpolating across them (following Kret & Sjak-Shie, 2018). This is a change in default behavior from eyeris <= 3.2.0 and may affect your results. To restore the previous behavior, set `interpolate = list(max_gap_ms = Inf)` in `glassbox()` (or `max_gap_ms = Inf` in `interpolate()`). ! [2026-09-03 09:03:26] [WARN] `lpfilt()` is operating on data that contains gaps longer than the interpolation limit (`max_gap_ms`), which were left as `NA`. These gaps are temporarily filled so the filter can run and then masked back to `NA`; this can slightly bias the valid pupil samples immediately adjacent to each gap toward the interpolated values. If this bias is a concern for your analysis, consider disabling filtering and/or downsampling (e.g. `lpfilt = FALSE` and/or `downsample = FALSE` in `glassbox()`). ! [2026-09-03 09:03:27] [WARN] `downsample()` is operating on data that contains gaps longer than the interpolation limit (`max_gap_ms`), which were left as `NA`. These gaps are temporarily filled so the filter can run and then masked back to `NA`; this can slightly bias the valid pupil samples immediately adjacent to each gap toward the interpolated values. If this bias is a concern for your analysis, consider disabling filtering and/or downsampling (e.g. `lpfilt = FALSE` and/or `downsample = FALSE` in `glassbox()`). ! [2026-09-03 09:03:28] [WARN] `lpfilt()` is operating on data that contains gaps longer than the interpolation limit (`max_gap_ms`), which were left as `NA`. These gaps are temporarily filled so the filter can run and then masked back to `NA`; this can slightly bias the valid pupil samples immediately adjacent to each gap toward the interpolated values. If this bias is a concern for your analysis, consider disabling filtering and/or downsampling (e.g. `lpfilt = FALSE` and/or `downsample = FALSE` in `glassbox()`). ! [2026-09-03 09:03:28] [WARN] `downsample()` is operating on data that contains gaps longer than the interpolation limit (`max_gap_ms`), which were left as `NA`. These gaps are temporarily filled so the filter can run and then masked back to `NA`; this can slightly bias the valid pupil samples immediately adjacent to each gap toward the interpolated values. If this bias is a concern for your analysis, consider disabling filtering and/or downsampling (e.g. `lpfilt = FALSE` and/or `downsample = FALSE` in `glassbox()`). ! [2026-09-03 09:03:29] [WARN] `lpfilt()` is operating on data that contains gaps longer than the interpolation limit (`max_gap_ms`), which were left as `NA`. These gaps are temporarily filled so the filter can run and then masked back to `NA`; this can slightly bias the valid pupil samples immediately adjacent to each gap toward the interpolated values. If this bias is a concern for your analysis, consider disabling filtering and/or downsampling (e.g. `lpfilt = FALSE` and/or `downsample = FALSE` in `glassbox()`). ! [2026-09-03 09:03:30] [WARN] Interpolation now leaves gaps longer than 250 ms as `NA` instead of interpolating across them (following Kret & Sjak-Shie, 2018). This is a change in default behavior from eyeris <= 3.2.0 and may affect your results. To restore the previous behavior, set `interpolate = list(max_gap_ms = Inf)` in `glassbox()` (or `max_gap_ms = Inf` in `interpolate()`). i [2026-09-03 09:03:32] [INFO] Epoching pupil data... i [2026-09-03 09:03:32] [INFO] Block 1: found 3 matching events for PROBE v [2026-09-03 09:03:32] [OKAY] Done! v [2026-09-03 09:03:32] [OKAY] Block 1: pupil data from 3 unique event messages extracted v [2026-09-03 09:03:32] [OKAY] Pupil epoching completed in 0.19 seconds i [2026-09-03 09:03:32] [INFO] Recalculating epoched confounds for new epochs... v [2026-09-03 09:03:32] [OKAY] Running eyeris::load_asc() v [2026-09-03 09:03:32] [OKAY] Running eyeris::resample() i [2026-09-03 09:03:32] [INFO] Processing block: block_1 v [2026-09-03 09:03:32] [OKAY] Running eyeris::deblink() for block_1 v [2026-09-03 09:03:32] [OKAY] Running eyeris::detransient() for block_1 v [2026-09-03 09:03:33] [OKAY] Running eyeris::interpolate() for block_1 ! [2026-09-03 09:03:33] [WARN] Interpolation now leaves gaps longer than 250 ms as `NA` instead of interpolating across them (following Kret & Sjak-Shie, 2018). This is a change in default behavior from eyeris <= 3.2.0 and may affect your results. To restore the previous behavior, set `interpolate = list(max_gap_ms = Inf)` in `glassbox()` (or `max_gap_ms = Inf` in `interpolate()`). v [2026-09-03 09:03:33] [OKAY] Running eyeris::lpfilt() for block_1 ! [2026-09-03 09:03:33] [WARN] Skipping eyeris::downsample() for block_1 ! [2026-09-03 09:03:33] [WARN] Skipping eyeris::bin() for block_1 ! [2026-09-03 09:03:33] [WARN] Skipping eyeris::detrend() for block_1 v [2026-09-03 09:03:33] [OKAY] Running eyeris::zscore() for block_1 i [2026-09-03 09:03:33] [INFO] Block processing summary: i [2026-09-03 09:03:33] [INFO] block_1: OK (steps: 6, latest: pupil_raw_deblink_detransient_interpolate_lpfilt_z) v [2026-09-03 09:03:33] [OKAY] Running eyeris::summarize_confounds() ** DuckDB not found. Database features are disabled. => To install DuckDB: - macOS: install.packages('duckdb', type = 'binary') - Linux: use system packages (e.g., `sudo apt-get install r-cran-duckdb`) or install.packages('duckdb') if binaries are available - Windows: install.packages('duckdb') Once installed, restart R and reload eyeris to enable database storage (bidsify(..., db_enabled = TRUE) and eyeris_db_* functions). Saving _problems/test-parallel-database-21.R v [2026-09-03 09:03:33] [OKAY] Running eyeris::load_asc() v [2026-09-03 09:03:33] [OKAY] Running eyeris::resample() i [2026-09-03 09:03:33] [INFO] Processing block: block_1 v [2026-09-03 09:03:33] [OKAY] Running eyeris::deblink() for block_1 v [2026-09-03 09:03:33] [OKAY] Running eyeris::detransient() for block_1 v [2026-09-03 09:03:33] [OKAY] Running eyeris::interpolate() for block_1 ! [2026-09-03 09:03:33] [WARN] Interpolation now leaves gaps longer than 250 ms as `NA` instead of interpolating across them (following Kret & Sjak-Shie, 2018). This is a change in default behavior from eyeris <= 3.2.0 and may affect your results. To restore the previous behavior, set `interpolate = list(max_gap_ms = Inf)` in `glassbox()` (or `max_gap_ms = Inf` in `interpolate()`). v [2026-09-03 09:03:33] [OKAY] Running eyeris::lpfilt() for block_1 ! [2026-09-03 09:03:33] [WARN] Skipping eyeris::downsample() for block_1 ! [2026-09-03 09:03:33] [WARN] Skipping eyeris::bin() for block_1 ! [2026-09-03 09:03:33] [WARN] Skipping eyeris::detrend() for block_1 v [2026-09-03 09:03:33] [OKAY] Running eyeris::zscore() for block_1 i [2026-09-03 09:03:33] [INFO] Block processing summary: i [2026-09-03 09:03:33] [INFO] block_1: OK (steps: 6, latest: pupil_raw_deblink_detransient_interpolate_lpfilt_z) v [2026-09-03 09:03:33] [OKAY] Running eyeris::summarize_confounds() ** DuckDB not found. Database features are disabled. => To install DuckDB: - macOS: install.packages('duckdb', type = 'binary') - Linux: use system packages (e.g., `sudo apt-get install r-cran-duckdb`) or install.packages('duckdb') if binaries are available - Windows: install.packages('duckdb') Once installed, restart R and reload eyeris to enable database storage (bidsify(..., db_enabled = TRUE) and eyeris_db_* functions). Saving _problems/test-parallel-database-42.R v [2026-09-03 09:03:33] [OKAY] Running eyeris::load_asc() v [2026-09-03 09:03:33] [OKAY] Running eyeris::resample() i [2026-09-03 09:03:33] [INFO] Processing block: block_1 v [2026-09-03 09:03:33] [OKAY] Running eyeris::deblink() for block_1 v [2026-09-03 09:03:33] [OKAY] Running eyeris::detransient() for block_1 v [2026-09-03 09:03:33] [OKAY] Running eyeris::interpolate() for block_1 ! [2026-09-03 09:03:33] [WARN] Interpolation now leaves gaps longer than 250 ms as `NA` instead of interpolating across them (following Kret & Sjak-Shie, 2018). This is a change in default behavior from eyeris <= 3.2.0 and may affect your results. To restore the previous behavior, set `interpolate = list(max_gap_ms = Inf)` in `glassbox()` (or `max_gap_ms = Inf` in `interpolate()`). v [2026-09-03 09:03:33] [OKAY] Running eyeris::lpfilt() for block_1 ! [2026-09-03 09:03:33] [WARN] Skipping eyeris::downsample() for block_1 ! [2026-09-03 09:03:33] [WARN] Skipping eyeris::bin() for block_1 ! [2026-09-03 09:03:33] [WARN] Skipping eyeris::detrend() for block_1 v [2026-09-03 09:03:33] [OKAY] Running eyeris::zscore() for block_1 i [2026-09-03 09:03:33] [INFO] Block processing summary: i [2026-09-03 09:03:33] [INFO] block_1: OK (steps: 6, latest: pupil_raw_deblink_detransient_interpolate_lpfilt_z) v [2026-09-03 09:03:33] [OKAY] Running eyeris::summarize_confounds() ** DuckDB not found. Database features are disabled. => To install DuckDB: - macOS: install.packages('duckdb', type = 'binary') - Linux: use system packages (e.g., `sudo apt-get install r-cran-duckdb`) or install.packages('duckdb') if binaries are available - Windows: install.packages('duckdb') Once installed, restart R and reload eyeris to enable database storage (bidsify(..., db_enabled = TRUE) and eyeris_db_* functions). Saving _problems/test-parallel-database-62.R v [2026-09-03 09:03:34] [OKAY] Running eyeris::load_asc() v [2026-09-03 09:03:34] [OKAY] Running eyeris::resample() i [2026-09-03 09:03:34] [INFO] Processing block: block_1 v [2026-09-03 09:03:34] [OKAY] Running eyeris::deblink() for block_1 v [2026-09-03 09:03:34] [OKAY] Running eyeris::detransient() for block_1 v [2026-09-03 09:03:34] [OKAY] Running eyeris::interpolate() for block_1 ! [2026-09-03 09:03:34] [WARN] Interpolation now leaves gaps longer than 250 ms as `NA` instead of interpolating across them (following Kret & Sjak-Shie, 2018). This is a change in default behavior from eyeris <= 3.2.0 and may affect your results. To restore the previous behavior, set `interpolate = list(max_gap_ms = Inf)` in `glassbox()` (or `max_gap_ms = Inf` in `interpolate()`). v [2026-09-03 09:03:34] [OKAY] Running eyeris::lpfilt() for block_1 ! [2026-09-03 09:03:34] [WARN] Skipping eyeris::downsample() for block_1 ! [2026-09-03 09:03:34] [WARN] Skipping eyeris::bin() for block_1 ! [2026-09-03 09:03:34] [WARN] Skipping eyeris::detrend() for block_1 v [2026-09-03 09:03:34] [OKAY] Running eyeris::zscore() for block_1 i [2026-09-03 09:03:34] [INFO] Block processing summary: i [2026-09-03 09:03:34] [INFO] block_1: OK (steps: 6, latest: pupil_raw_deblink_detransient_interpolate_lpfilt_z) v [2026-09-03 09:03:34] [OKAY] Running eyeris::summarize_confounds() ** DuckDB not found. Database features are disabled. => To install DuckDB: - macOS: install.packages('duckdb', type = 'binary') - Linux: use system packages (e.g., `sudo apt-get install r-cran-duckdb`) or install.packages('duckdb') if binaries are available - Windows: install.packages('duckdb') Once installed, restart R and reload eyeris to enable database storage (bidsify(..., db_enabled = TRUE) and eyeris_db_* functions). Saving _problems/test-parallel-database-82.R ** DuckDB not found. Database features are disabled. => To install DuckDB: - macOS: install.packages('duckdb', type = 'binary') - Linux: use system packages (e.g., `sudo apt-get install r-cran-duckdb`) or install.packages('duckdb') if binaries are available - Windows: install.packages('duckdb') Once installed, restart R and reload eyeris to enable database storage (bidsify(..., db_enabled = TRUE) and eyeris_db_* functions). Saving _problems/test-parallel-database-91.R ** DuckDB not found. Database features are disabled. => To install DuckDB: - macOS: install.packages('duckdb', type = 'binary') - Linux: use system packages (e.g., `sudo apt-get install r-cran-duckdb`) or install.packages('duckdb') if binaries are available - Windows: install.packages('duckdb') Once installed, restart R and reload eyeris to enable database storage (bidsify(..., db_enabled = TRUE) and eyeris_db_* functions). Saving _problems/test-parallel-database-111.R ** DuckDB not found. Database features are disabled. => To install DuckDB: - macOS: install.packages('duckdb', type = 'binary') - Linux: use system packages (e.g., `sudo apt-get install r-cran-duckdb`) or install.packages('duckdb') if binaries are available - Windows: install.packages('duckdb') Once installed, restart R and reload eyeris to enable database storage (bidsify(..., db_enabled = TRUE) and eyeris_db_* functions). Saving _problems/test-parquet-split-15.R ** DuckDB not found. Database features are disabled. => To install DuckDB: - macOS: install.packages('duckdb', type = 'binary') - Linux: use system packages (e.g., `sudo apt-get install r-cran-duckdb`) or install.packages('duckdb') if binaries are available - Windows: install.packages('duckdb') Once installed, restart R and reload eyeris to enable database storage (bidsify(..., db_enabled = TRUE) and eyeris_db_* functions). Saving _problems/test-parquet-split-100.R ** DuckDB not found. Database features are disabled. => To install DuckDB: - macOS: install.packages('duckdb', type = 'binary') - Linux: use system packages (e.g., `sudo apt-get install r-cran-duckdb`) or install.packages('duckdb') if binaries are available - Windows: install.packages('duckdb') Once installed, restart R and reload eyeris to enable database storage (bidsify(..., db_enabled = TRUE) and eyeris_db_* functions). Saving _problems/test-parquet-split-171.R ** DuckDB not found. Database features are disabled. => To install DuckDB: - macOS: install.packages('duckdb', type = 'binary') - Linux: use system packages (e.g., `sudo apt-get install r-cran-duckdb`) or install.packages('duckdb') if binaries are available - Windows: install.packages('duckdb') Once installed, restart R and reload eyeris to enable database storage (bidsify(..., db_enabled = TRUE) and eyeris_db_* functions). Saving _problems/test-parquet-split-231.R ** DuckDB not found. Database features are disabled. => To install DuckDB: - macOS: install.packages('duckdb', type = 'binary') - Linux: use system packages (e.g., `sudo apt-get install r-cran-duckdb`) or install.packages('duckdb') if binaries are available - Windows: install.packages('duckdb') Once installed, restart R and reload eyeris to enable database storage (bidsify(..., db_enabled = TRUE) and eyeris_db_* functions). Saving _problems/test-parquet-split-283.R v [2026-09-03 09:03:35] [OKAY] Running eyeris::load_asc() v [2026-09-03 09:03:35] [OKAY] Running eyeris::resample() i [2026-09-03 09:03:35] [INFO] Processing block: block_1 v [2026-09-03 09:03:35] [OKAY] Running eyeris::deblink() for block_1 v [2026-09-03 09:03:35] [OKAY] Running eyeris::detransient() for block_1 v [2026-09-03 09:03:36] [OKAY] Running eyeris::interpolate() for block_1 ! [2026-09-03 09:03:36] [WARN] Interpolation now leaves gaps longer than 250 ms as `NA` instead of interpolating across them (following Kret & Sjak-Shie, 2018). This is a change in default behavior from eyeris <= 3.2.0 and may affect your results. To restore the previous behavior, set `interpolate = list(max_gap_ms = Inf)` in `glassbox()` (or `max_gap_ms = Inf` in `interpolate()`). v [2026-09-03 09:03:36] [OKAY] Running eyeris::lpfilt() for block_1 ! [2026-09-03 09:03:36] [WARN] Skipping eyeris::downsample() for block_1 ! [2026-09-03 09:03:36] [WARN] Skipping eyeris::bin() for block_1 ! [2026-09-03 09:03:36] [WARN] Skipping eyeris::detrend() for block_1 v [2026-09-03 09:03:36] [OKAY] Running eyeris::zscore() for block_1 i [2026-09-03 09:03:36] [INFO] Block processing summary: i [2026-09-03 09:03:36] [INFO] block_1: OK (steps: 6, latest: pupil_raw_deblink_detransient_interpolate_lpfilt_z) v [2026-09-03 09:03:36] [OKAY] Running eyeris::summarize_confounds() v [2026-09-03 09:03:38] [OKAY] Running eyeris::load_asc() i [2026-09-03 09:03:38] [INFO] Binocular data detected. Processing average mode. v [2026-09-03 09:03:38] [OKAY] Running eyeris::resample() i [2026-09-03 09:03:38] [INFO] Processing block: block_1 v [2026-09-03 09:03:38] [OKAY] Running eyeris::deblink() for block_1 v [2026-09-03 09:03:38] [OKAY] Running eyeris::detransient() for block_1 v [2026-09-03 09:03:38] [OKAY] Running eyeris::interpolate() for block_1 ! [2026-09-03 09:03:38] [WARN] Interpolation now leaves gaps longer than 250 ms as `NA` instead of interpolating across them (following Kret & Sjak-Shie, 2018). This is a change in default behavior from eyeris <= 3.2.0 and may affect your results. To restore the previous behavior, set `interpolate = list(max_gap_ms = Inf)` in `glassbox()` (or `max_gap_ms = Inf` in `interpolate()`). ! [2026-09-03 09:03:38] [WARN] No NAs detected in pupil data... Skipping interpolation! v [2026-09-03 09:03:38] [OKAY] Running eyeris::lpfilt() for block_1 ! [2026-09-03 09:03:38] [WARN] Skipping eyeris::downsample() for block_1 ! [2026-09-03 09:03:38] [WARN] Skipping eyeris::bin() for block_1 ! [2026-09-03 09:03:38] [WARN] Skipping eyeris::detrend() for block_1 v [2026-09-03 09:03:38] [OKAY] Running eyeris::zscore() for block_1 i [2026-09-03 09:03:38] [INFO] Block processing summary: i [2026-09-03 09:03:38] [INFO] block_1: OK (steps: 6, latest: pupil_raw_deblink_detransient_interpolate_lpfilt_z) v [2026-09-03 09:03:38] [OKAY] Running eyeris::summarize_confounds() ! [2026-09-03 09:03:48] [WARN] Non-uniform sampling intervals detected: 1 of 4 intervals (25%) differ from the expected 1 ms spacing (nominal rate: 1000 Hz); 1 longer and 0 shorter. Estimated 2 dropped sample(s); largest long interval is 3 ms (~3x expected). First irregular interval occurs before sample 4. This violates the uniform-sampling assumption of the eyeris pipeline. Consider resampling onto a regular time grid before preprocessing. ! [2026-09-03 09:03:48] [WARN] Non-uniform sampling intervals detected: 2 of 7 intervals (28.57%) differ from the expected 1 ms spacing (nominal rate: 1000 Hz); 2 longer and 0 shorter. Estimated 5 dropped sample(s); largest long interval is 4 ms (~4x expected). First irregular interval occurs before sample 4. This violates the uniform-sampling assumption of the eyeris pipeline. Consider resampling onto a regular time grid before preprocessing. ! [2026-09-03 09:03:48] [WARN] Non-uniform sampling intervals detected: 2 of 5 intervals (40%) differ from the expected 4 ms spacing (nominal rate: 250 Hz); 0 longer and 2 shorter. First irregular interval occurs before sample 3. This violates the uniform-sampling assumption of the eyeris pipeline. Consider resampling onto a regular time grid before preprocessing. ! [2026-09-03 09:03:48] [WARN] Non-uniform sampling intervals detected: 1 of 4 intervals (25%) differ from the expected 1 ms spacing (nominal rate: inferred from data); 1 longer and 0 shorter. Estimated 2 dropped sample(s); largest long interval is 3 ms (~3x expected). First irregular interval occurs before sample 4. This violates the uniform-sampling assumption of the eyeris pipeline. Consider resampling onto a regular time grid before preprocessing. ! [2026-09-03 09:03:48] [WARN] Non-uniform sampling intervals detected: 1 of 6 intervals (16.67%) differ from the expected 1 ms spacing (nominal rate: 1000 Hz); 1 longer and 0 shorter. Estimated 996 dropped sample(s); largest long interval is 997 ms (~997x expected). First irregular interval occurs before sample 5. This violates the uniform-sampling assumption of the eyeris pipeline. Consider resampling onto a regular time grid before preprocessing. ! [2026-09-03 09:03:48] [WARN] Non-uniform sampling intervals detected in block_2: 1 of 2 intervals (50%) differ from the expected 1 ms spacing (nominal rate: 1000 Hz); 1 longer and 0 shorter. Estimated 2 dropped sample(s); largest long interval is 3 ms (~3x expected). First irregular interval occurs before sample 3. This violates the uniform-sampling assumption of the eyeris pipeline. Consider resampling onto a regular time grid before preprocessing. ! [2026-09-03 09:03:48] [WARN] Non-uniform sampling intervals detected: 1 of 4 intervals (25%) differ from the expected 1 ms spacing (nominal rate: 1000 Hz); 1 longer and 0 shorter. Estimated 1 dropped sample(s); largest long interval is 2 ms (~2x expected). First irregular interval occurs before sample 3. This violates the uniform-sampling assumption of the eyeris pipeline. Consider resampling onto a regular time grid before preprocessing. ! [2026-09-03 09:03:48] [WARN] Effective sampling rate (~500 Hz, 2 ms spacing) is lower than the device's reported 1000 Hz (1 ms). This can indicate systematic sample dropout (e.g., every Nth sample missing), which leaves a uniform but coarser time grid that the eyeris pipeline would otherwise treat as the true sampling rate. Verify the recording against the tracker's configured sampling rate. [ FAIL 12 | WARN 1 | SKIP 11 | PASS 560 ] ══ Skipped tests (11) ══════════════════════════════════════════════════════════ • On CRAN (5): 'test-bidsify-multirun-epochs.R:87:3', 'test-bidsify-multirun-epochs.R:125:3', 'test-bidsify-runnum-override.R:58:3', 'test-bidsify-runnum-override.R:105:3', 'test-bidsify-task-run-collision.R:46:3' • {duckdb} is not installed (1): 'test-database.R:1:1' • {duckdb} is not installed. (5): 'test-chunked-processing.R:3:3', 'test-chunked-processing.R:107:3', 'test-chunked-processing.R:159:3', 'test-chunked-processing.R:208:3', 'test-chunked-processing.R:340:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-chunked-processing.R:136:3'): eyeris_db_to_chunked_files validates inputs correctly ── Error in `log_message("EXIT", ..., verbose = TRUE, wrap = wrap, .envir = .envir)`: formal argument "verbose" matched by multiple actual arguments Backtrace: ▆ 1. ├─testthat::expect_error(...) at test-chunked-processing.R:136:3 2. │ └─testthat:::expect_condition_matching_(...) 3. │ └─testthat:::quasi_capture(...) 4. │ ├─testthat (local) .capture(...) 5. │ │ └─base::withCallingHandlers(...) 6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 7. └─eyeris::eyeris_db_to_chunked_files(...) 8. └─eyeris:::log_error(...) ── Failure ('test-parallel-database.R:9:5'): manual parallel processing flag enables temporary databases ── Expected `{ ... }` not to throw any errors. Actually got a with message: formal argument "verbose" matched by multiple actual arguments Backtrace: ▆ 1. ├─withr::with_envvar(...) at test-parallel-database.R:4:3 2. │ └─base::force(code) 3. └─testthat::expect_no_error(...) at test-parallel-database.R:9:5 ── Failure ('test-parallel-database.R:31:5'): SLURM environment variables are detected for parallel processing ── Expected `{ ... }` not to throw any errors. Actually got a with message: formal argument "verbose" matched by multiple actual arguments Backtrace: ▆ 1. ├─withr::with_envvar(...) at test-parallel-database.R:28:3 2. │ └─base::force(code) 3. └─testthat::expect_no_error(...) at test-parallel-database.R:31:5 ── Failure ('test-parallel-database.R:51:5'): PBS environment variables are detected for parallel processing ── Expected `{ ... }` not to throw any errors. Actually got a with message: formal argument "verbose" matched by multiple actual arguments Backtrace: ▆ 1. ├─withr::with_envvar(...) at test-parallel-database.R:48:3 2. │ └─base::force(code) 3. └─testthat::expect_no_error(...) at test-parallel-database.R:51:5 ── Failure ('test-parallel-database.R:70:3'): normal database operation works without parallel processing ── Expected `{ ... }` not to throw any errors. Actually got a with message: formal argument "verbose" matched by multiple actual arguments ── Error ('test-parallel-database.R:87:3'): temporary database creation works ── Error in `log_message("EXIT", ..., verbose = TRUE, wrap = wrap, .envir = .envir)`: formal argument "verbose" matched by multiple actual arguments Backtrace: ▆ 1. └─eyeris:::create_temp_eyeris_database(...) at test-parallel-database.R:87:3 2. └─eyeris:::log_error(...) ── Error ('test-parallel-database.R:107:3'): temporary database merging works ── Error in `log_message("EXIT", ..., verbose = TRUE, wrap = wrap, .envir = .envir)`: formal argument "verbose" matched by multiple actual arguments Backtrace: ▆ 1. └─eyeris:::create_temp_eyeris_database(...) at test-parallel-database.R:107:3 2. └─eyeris:::log_error(...) ── Error ('test-parquet-split.R:11:3'): eyeris_db_to_parquet creates correctly named files and folders ── Error in `log_message("EXIT", ..., verbose = TRUE, wrap = wrap, .envir = .envir)`: formal argument "verbose" matched by multiple actual arguments Backtrace: ▆ 1. └─eyeris:::connect_eyeris_database(...) at test-parquet-split.R:11:3 2. └─eyeris:::log_error(...) ── Error ('test-parquet-split.R:96:3'): read_eyeris_parquet correctly reads back split data ── Error in `log_message("EXIT", ..., verbose = TRUE, wrap = wrap, .envir = .envir)`: formal argument "verbose" matched by multiple actual arguments Backtrace: ▆ 1. └─eyeris:::connect_eyeris_database(...) at test-parquet-split.R:96:3 2. └─eyeris:::log_error(...) ── Error ('test-parquet-split.R:167:3'): eyeris_db_to_parquet handles file size constraints ── Error in `log_message("EXIT", ..., verbose = TRUE, wrap = wrap, .envir = .envir)`: formal argument "verbose" matched by multiple actual arguments Backtrace: ▆ 1. └─eyeris:::connect_eyeris_database(...) at test-parquet-split.R:167:3 2. └─eyeris:::log_error(...) ── Error ('test-parquet-split.R:227:3'): eyeris_db_to_parquet handles empty database gracefully ── Error in `log_message("EXIT", ..., verbose = TRUE, wrap = wrap, .envir = .envir)`: formal argument "verbose" matched by multiple actual arguments Backtrace: ▆ 1. └─eyeris:::connect_eyeris_database(...) at test-parquet-split.R:227:3 2. └─eyeris:::log_error(...) ── Error ('test-parquet-split.R:279:5'): read_eyeris_parquet works with db_name parameter ── Error in `log_message("EXIT", ..., verbose = TRUE, wrap = wrap, .envir = .envir)`: formal argument "verbose" matched by multiple actual arguments Backtrace: ▆ 1. └─eyeris::read_eyeris_parquet(...) at test-parquet-split.R:279:5 2. └─eyeris:::log_error(...) [ FAIL 12 | WARN 1 | SKIP 11 | PASS 560 ] Error: ! Test failures. Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [23s/33s] OK * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/data/localhost/ripley/R/packages/tests-clang-trunk/eyeris.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 3:52.34, 169.59 + 10.08