* installing *source* package ‘biglasso’ ... ** this is package ‘biglasso’ version ‘1.7.0’ ** package ‘biglasso’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘clang version 23.1.0-rc3’ using C++ compiler: ‘clang version 23.1.0-rc3’ make[2]: Entering directory '/data/localhost/ripley/R/packages/tests-clang-trunk/biglasso/src' /usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang-trunk/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/bigmemory/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c RcppExports.cpp -o RcppExports.o /usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang-trunk/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/bigmemory/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c binomial.cpp -o binomial.o /usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang-trunk/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/bigmemory/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c cox.cpp -o cox.o In file included from binomial.cpp:1: In file included from ./utilities.h:12: In file included from /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:9: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/mapped_region.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/interprocess_fwd.hpp:25: /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:26:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 26 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :224:69: note: expanded from here 224 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:54:1: note: '#pragma clang attribute push' regions ends here 54 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :226:8: note: expanded from here 226 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from binomial.cpp:1: In file included from ./utilities.h:12: In file included from /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:9: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/mapped_region.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/interprocess_fwd.hpp:25: /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:26:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 26 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :224:110: note: expanded from here 224 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:54:1: note: '#pragma clang attribute push' regions ends here 54 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :226:8: note: expanded from here 226 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from binomial.cpp:1: In file included from ./utilities.h:12: In file included from /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:9: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/mapped_region.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/interprocess_fwd.hpp:25: /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:26:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 26 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :224:136: note: expanded from here 224 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:54:1: note: '#pragma clang attribute push' regions ends here 54 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :226:8: note: expanded from here 226 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from cox.cpp:1: In file included from ./utilities.h:12: In file included from /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:9: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/mapped_region.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/interprocess_fwd.hpp:25: /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:26:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 26 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :224:69: note: expanded from here 224 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:54:1: note: '#pragma clang attribute push' regions ends here 54 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :226:8: note: expanded from here 226 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from cox.cpp:1: In file included from ./utilities.h:12: In file included from /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:9: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/mapped_region.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/interprocess_fwd.hpp:25: /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:26:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 26 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :224:110: note: expanded from here 224 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:54:1: note: '#pragma clang attribute push' regions ends here 54 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :226:8: note: expanded from here 226 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from cox.cpp:1: In file included from ./utilities.h:12: In file included from /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:9: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/mapped_region.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/interprocess_fwd.hpp:25: /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:26:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 26 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :224:136: note: expanded from here 224 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:54:1: note: '#pragma clang attribute push' regions ends here 54 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :226:8: note: expanded from here 226 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ /usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang-trunk/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/bigmemory/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c gaussian.cpp -o gaussian.o In file included from gaussian.cpp:1: In file included from ./utilities.h:12: In file included from /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:9: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/mapped_region.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/interprocess_fwd.hpp:25: /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:26:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 26 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :224:69: note: expanded from here 224 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:54:1: note: '#pragma clang attribute push' regions ends here 54 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :226:8: note: expanded from here 226 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from gaussian.cpp:1: In file included from ./utilities.h:12: In file included from /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:9: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/mapped_region.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/interprocess_fwd.hpp:25: /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:26:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 26 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :224:110: note: expanded from here 224 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:54:1: note: '#pragma clang attribute push' regions ends here 54 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :226:8: note: expanded from here 226 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from gaussian.cpp:1: In file included from ./utilities.h:12: In file included from /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:9: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/mapped_region.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/interprocess_fwd.hpp:25: /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:26:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 26 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :224:136: note: expanded from here 224 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:54:1: note: '#pragma clang attribute push' regions ends here 54 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :226:8: note: expanded from here 226 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from RcppExports.cpp:4: In file included from /data/localhost/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /data/localhost/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:51: In file included from /data/localhost/ripley/R/test-clang/RcppArmadillo/include/armadillo:436: /data/localhost/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/debug.hpp:198:1: warning: unused function template 'arma_stop_runtime_error' [-Wunused-template] 198 | arma_stop_runtime_error(const T1& x) | ^~~~~~~~~~~~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/debug.hpp:241:1: warning: unused function template 'arma_print' [-Wunused-template] 241 | arma_print(const T1& x, const T2& y) | ^~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/debug.hpp:253:1: warning: unused function template 'arma_print' [-Wunused-template] 253 | arma_print(const T1& x, const T2& y, const T3& z) | ^~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/debug.hpp:335:1: warning: unused function template 'arma_plain_warn' [-Wunused-template] 335 | arma_plain_warn(const T1& arg1) | ^~~~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/debug.hpp:346:1: warning: unused function template 'arma_plain_warn' [-Wunused-template] 346 | arma_plain_warn(const T1& arg1, const T2& arg2) | ^~~~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/debug.hpp:357:1: warning: unused function template 'arma_plain_warn' [-Wunused-template] 357 | arma_plain_warn(const T1& arg1, const T2& arg2, const T3& arg3) | ^~~~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/debug.hpp:368:1: warning: unused function template 'arma_plain_warn' [-Wunused-template] 368 | arma_plain_warn(const T1& arg1, const T2& arg2, const T3& arg3, const T4& arg4) | ^~~~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/debug.hpp:545:1: warning: unused function template 'arma_incompat_size_string' [-Wunused-template] 545 | arma_incompat_size_string(const subview_cube& Q, const Mat& A, const char* x) | ^~~~~~~~~~~~~~~~~~~~~~~~~ 8 warnings generated. In file included from gaussian.cpp:1: In file included from ./utilities.h:12: /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:62:24: error: no member named 'back_inserter' in namespace 'std' 62 | std::back_inserter(ret) ); | ^~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:75:24: error: no member named 'back_inserter' in namespace 'std' 75 | std::back_inserter(ret) ); | ^~~~~~~~~~~~~ In file included from cox.cpp:1: In file included from ./utilities.h:12: /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:62:24: error: no member named 'back_inserter' in namespace 'std' 62 | std::back_inserter(ret) ); | ^~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:75:24: error: no member named 'back_inserter' in namespace 'std' 75 | std::back_inserter(ret) ); | ^~~~~~~~~~~~~ In file included from binomial.cpp:1: In file included from ./utilities.h:12: /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:62:24: error: no member named 'back_inserter' in namespace 'std' 62 | std::back_inserter(ret) ); | ^~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:75:24: error: no member named 'back_inserter' in namespace 'std' 75 | std::back_inserter(ret) ); | ^~~~~~~~~~~~~ /usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang-trunk/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/bigmemory/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c gaussian_simple.cpp -o gaussian_simple.o In file included from gaussian_simple.cpp:1: In file included from ./utilities.h:12: In file included from /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:9: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/mapped_region.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/interprocess_fwd.hpp:25: /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:26:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 26 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :224:69: note: expanded from here 224 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:54:1: note: '#pragma clang attribute push' regions ends here 54 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :226:8: note: expanded from here 226 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from gaussian_simple.cpp:1: In file included from ./utilities.h:12: In file included from /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:9: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/mapped_region.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/interprocess_fwd.hpp:25: /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:26:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 26 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :224:110: note: expanded from here 224 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:54:1: note: '#pragma clang attribute push' regions ends here 54 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :226:8: note: expanded from here 226 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from gaussian_simple.cpp:1: In file included from ./utilities.h:12: In file included from /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:9: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/mapped_region.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/interprocess_fwd.hpp:25: /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:26:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 26 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :224:136: note: expanded from here 224 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:54:1: note: '#pragma clang attribute push' regions ends here 54 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :226:8: note: expanded from here 226 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from gaussian_simple.cpp:1: In file included from ./utilities.h:12: /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:62:24: error: no member named 'back_inserter' in namespace 'std' 62 | std::back_inserter(ret) ); | ^~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:75:24: error: no member named 'back_inserter' in namespace 'std' 75 | std::back_inserter(ret) ); | ^~~~~~~~~~~~~ 3 warnings and 2 errors generated. 3 warnings and 2 errors generated. make[2]: *** [/data/localhost/ripley/R/R-clang-trunk/etc/Makeconf:197: cox.o] Error 1 make[2]: *** [/data/localhost/ripley/R/R-clang-trunk/etc/Makeconf:197: gaussian.o] Error 1 3 warnings and 2 errors generated. make[2]: *** [/data/localhost/ripley/R/R-clang-trunk/etc/Makeconf:197: binomial.o] Error 1 3 warnings and 2 errors generated. make[2]: *** [/data/localhost/ripley/R/R-clang-trunk/etc/Makeconf:197: gaussian_simple.o] Error 1 /usr/local/clang23/bin/clang -std=gnu23 -I"/data/localhost/ripley/R/R-clang-trunk/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/bigmemory/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c init.c -o init.o /usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang-trunk/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/bigmemory/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c mgaussian.cpp -o mgaussian.o In file included from mgaussian.cpp:1: In file included from ./utilities.h:12: In file included from /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:9: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/mapped_region.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/interprocess_fwd.hpp:25: /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:26:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 26 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :224:69: note: expanded from here 224 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:54:1: note: '#pragma clang attribute push' regions ends here 54 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :226:8: note: expanded from here 226 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from mgaussian.cpp:1: In file included from ./utilities.h:12: In file included from /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:9: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/mapped_region.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/interprocess_fwd.hpp:25: /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:26:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 26 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :224:110: note: expanded from here 224 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:54:1: note: '#pragma clang attribute push' regions ends here 54 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :226:8: note: expanded from here 226 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from mgaussian.cpp:1: In file included from ./utilities.h:12: In file included from /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:9: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/mapped_region.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/interprocess_fwd.hpp:25: /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:26:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 26 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :224:136: note: expanded from here 224 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:54:1: note: '#pragma clang attribute push' regions ends here 54 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :226:8: note: expanded from here 226 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from mgaussian.cpp:1: In file included from ./utilities.h:12: /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:62:24: error: no member named 'back_inserter' in namespace 'std' 62 | std::back_inserter(ret) ); | ^~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:75:24: error: no member named 'back_inserter' in namespace 'std' 75 | std::back_inserter(ret) ); | ^~~~~~~~~~~~~ 3 warnings and 2 errors generated. make[2]: *** [/data/localhost/ripley/R/R-clang-trunk/etc/Makeconf:197: mgaussian.o] Error 1 /usr/local/clang23/bin/clang++ -std=gnu++20 -I"/data/localhost/ripley/R/R-clang-trunk/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-clang/bigmemory/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c utilities.cpp -o utilities.o In file included from utilities.cpp:10: In file included from ./utilities.h:12: In file included from /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:9: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/mapped_region.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/interprocess_fwd.hpp:25: /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:26:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 26 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :224:69: note: expanded from here 224 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:54:1: note: '#pragma clang attribute push' regions ends here 54 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :226:8: note: expanded from here 226 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from utilities.cpp:10: In file included from ./utilities.h:12: In file included from /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:9: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/mapped_region.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/interprocess_fwd.hpp:25: /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:26:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 26 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :224:110: note: expanded from here 224 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:54:1: note: '#pragma clang attribute push' regions ends here 54 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :226:8: note: expanded from here 226 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from utilities.cpp:10: In file included from ./utilities.h:12: In file included from /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:9: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/mapped_region.hpp:25: In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/interprocess_fwd.hpp:25: /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:26:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 26 | BOOST_MOVE_STD_NS_BEG | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :224:136: note: expanded from here 224 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function) | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/interprocess/detail/std_fwd.hpp:54:1: note: '#pragma clang attribute push' regions ends here 54 | BOOST_MOVE_STD_NS_END | ^ /data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :226:8: note: expanded from here 226 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from utilities.cpp:10: In file included from ./utilities.h:12: /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:62:24: error: no member named 'back_inserter' in namespace 'std' 62 | std::back_inserter(ret) ); | ^~~~~~~~~~~~~ /data/localhost/ripley/R/test-clang/bigmemory/include/bigmemory/BigMatrix.h:75:24: error: no member named 'back_inserter' in namespace 'std' 75 | std::back_inserter(ret) ); | ^~~~~~~~~~~~~ 3 warnings and 2 errors generated. make[2]: *** [/data/localhost/ripley/R/R-clang-trunk/etc/Makeconf:197: utilities.o] Error 1 make[2]: Target 'strippedLib' not remade because of errors. make[2]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang-trunk/biglasso/src' ERROR: compilation failed for package ‘biglasso’ * removing ‘/data/localhost/ripley/R/packages/tests-clang-trunk/biglasso.Rcheck/biglasso’