> install.packages(foo, configure.args = opts, Ncpus = 25)
Installing package into ‘/data/localhost/ripley/R/test-clang’
(as ‘lib’ is unspecified)
trying URL 'https://bioconductor.statistik.tu-dortmund.de/packages/3.23/bioc/src/contrib/BiocSingular_1.28.0.tar.gz'
Content type 'application/octet-stream' length 617239 bytes (602 KB)
==================================================
downloaded 602 KB

* installing *source* package ‘BiocSingular’ ...
** this is package ‘BiocSingular’ version ‘1.28.0’
** using staged installation
** libs
specified C++17
using C++ compiler: ‘clang version 23.1.2’
using C++17
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/beachmat/include' -I'/data/localhost/ripley/R/test-clang/assorthead/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c RcppExports.cpp -o RcppExports.o
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/beachmat/include' -I'/data/localhost/ripley/R/test-clang/assorthead/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw   -c compute_scale.cpp -o compute_scale.o
In file included from compute_scale.cpp:1:
In file included from /data/localhost/ripley/R/test-clang/beachmat/include/Rtatami.h:6:
/data/localhost/ripley/R/test-clang/assorthead/include/tatami_r/parallelize.hpp:112:54: error: no member named 'exception_ptr' in namespace 'std'
  112 |     auto errors = sanisizer::create<std::vector<std::exception_ptr> >(nthreads);
      |                                                      ^~~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/assorthead/include/tatami_r/parallelize.hpp:123:39: error: no member named 'current_exception' in namespace 'std'
  123 |                     errors[id] = std::current_exception();
      |                                       ^~~~~~~~~~~~~~~~~
/data/localhost/ripley/R/test-clang/assorthead/include/tatami_r/parallelize.hpp:142:18: error: no type named 'rethrow_exception' in namespace 'std'
  142 |             std::rethrow_exception(err);
      |             ~~~~~^
In file included from compute_scale.cpp:1:
In file included from /data/localhost/ripley/R/test-clang/beachmat/include/Rtatami.h:8:
In file included from /data/localhost/ripley/R/test-clang/assorthead/include/tatami_r/tatami_r.hpp:4:
/data/localhost/ripley/R/test-clang/assorthead/include/tatami_r/UnknownMatrix.hpp:233:35: warning: implicit conversion from 'type' (aka 'unsigned long') to 'typename storage_type<14>::type' (aka 'double') changes value from 18446744073709551615 to 18446744073709551616 [-Wimplicit-const-int-float-conversion]
  233 |             } else if (bsize[0] > std::numeric_limits<std::size_t>::max()) {
      |                                 ~ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1 warning and 3 errors generated.
make: *** [/data/localhost/ripley/R/R-clang/etc/Makeconf:197: compute_scale.o] Error 1
ERROR: compilation failed for package ‘BiocSingular’
* removing ‘/data/localhost/ripley/R/test-clang/BiocSingular’
* restoring previous ‘/data/localhost/ripley/R/test-clang/BiocSingular’

The downloaded source packages are in
	‘/tmp/Rtmp3W1mqo/downloaded_packages’
Warning message:
In install.packages(foo, configure.args = opts, Ncpus = 25) :
  installation of package ‘BiocSingular’ had non-zero exit status
> 
> warnings()
Warning message:
In install.packages(foo, configure.args = opts, Ncpus = 25) :
  installation of package ‘BiocSingular’ had non-zero exit status
>