> install.packages(foo, configure.args = opts, Ncpus = 25) Installing package into ‘/data/localhost/ripley/R/test-clang’ (as ‘lib’ is unspecified) trying URL 'https://bioconductor.statistik.tu-dortmund.de/packages/3.23/bioc/src/contrib/BiocNeighbors_2.6.0.tar.gz' Content type 'application/octet-stream' length 344668 bytes (336 KB) ================================================== downloaded 336 KB * installing *source* package ‘BiocNeighbors’ ... ** this is package ‘BiocNeighbors’ version ‘2.6.0’ ** using staged installation ** libs specified C++17 using C++ compiler: ‘clang version 23.1.2’ using C++17 /usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/assorthead/include' -I'/data/localhost/ripley/R/test-clang/beachmat/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:4: In file included from ./../inst/include/BiocNeighbors.h:8: In file included from /data/localhost/ripley/R/test-clang/assorthead/include/knncolle/knncolle.hpp:14: In file included from /data/localhost/ripley/R/test-clang/assorthead/include/knncolle/find_nearest_neighbors.hpp:12: In file included from /data/localhost/ripley/R/test-clang/assorthead/include/subpar/subpar.hpp:4: /data/localhost/ripley/R/test-clang/assorthead/include/subpar/range.hpp:195:33: error: calling 'current_exception' with incomplete return type 'exception_ptr' 195 | errors[w] = std::current_exception(); | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/clang23/bin/../include/c++/v1/__exception/operations.h:40:59: note: 'current_exception' declared here 40 | [[__nodiscard__]] _LIBCPP_EXPORTED_FROM_ABI exception_ptr current_exception() _NOEXCEPT; | ^ /usr/local/clang23/bin/../include/c++/v1/__exception/operations.h:38:33: note: forward declaration of 'std::exception_ptr' 38 | class _LIBCPP_EXPORTED_FROM_ABI exception_ptr; | ^ In file included from RcppExports.cpp:4: In file included from ./../inst/include/BiocNeighbors.h:8: In file included from /data/localhost/ripley/R/test-clang/assorthead/include/knncolle/knncolle.hpp:14: In file included from /data/localhost/ripley/R/test-clang/assorthead/include/knncolle/find_nearest_neighbors.hpp:12: In file included from /data/localhost/ripley/R/test-clang/assorthead/include/subpar/subpar.hpp:4: /data/localhost/ripley/R/test-clang/assorthead/include/subpar/range.hpp:211:29: error: calling 'current_exception' with incomplete return type 'exception_ptr' 211 | errors[0] = std::current_exception(); | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/clang23/bin/../include/c++/v1/__exception/operations.h:40:59: note: 'current_exception' declared here 40 | [[__nodiscard__]] _LIBCPP_EXPORTED_FROM_ABI exception_ptr current_exception() _NOEXCEPT; | ^ /usr/local/clang23/bin/../include/c++/v1/__exception/operations.h:38:33: note: forward declaration of 'std::exception_ptr' 38 | class _LIBCPP_EXPORTED_FROM_ABI exception_ptr; | ^ In file included from RcppExports.cpp:4: In file included from ./../inst/include/BiocNeighbors.h:8: In file included from /data/localhost/ripley/R/test-clang/assorthead/include/knncolle/knncolle.hpp:14: In file included from /data/localhost/ripley/R/test-clang/assorthead/include/knncolle/find_nearest_neighbors.hpp:12: In file included from /data/localhost/ripley/R/test-clang/assorthead/include/subpar/subpar.hpp:5: /data/localhost/ripley/R/test-clang/assorthead/include/subpar/simple.hpp:116:33: error: calling 'current_exception' with incomplete return type 'exception_ptr' 116 | errors[w] = std::current_exception(); | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/clang23/bin/../include/c++/v1/__exception/operations.h:40:59: note: 'current_exception' declared here 40 | [[__nodiscard__]] _LIBCPP_EXPORTED_FROM_ABI exception_ptr current_exception() _NOEXCEPT; | ^ /usr/local/clang23/bin/../include/c++/v1/__exception/operations.h:38:33: note: forward declaration of 'std::exception_ptr' 38 | class _LIBCPP_EXPORTED_FROM_ABI exception_ptr; | ^ In file included from RcppExports.cpp:4: In file included from ./../inst/include/BiocNeighbors.h:8: In file included from /data/localhost/ripley/R/test-clang/assorthead/include/knncolle/knncolle.hpp:14: In file included from /data/localhost/ripley/R/test-clang/assorthead/include/knncolle/find_nearest_neighbors.hpp:12: In file included from /data/localhost/ripley/R/test-clang/assorthead/include/subpar/subpar.hpp:5: /data/localhost/ripley/R/test-clang/assorthead/include/subpar/simple.hpp:129:29: error: calling 'current_exception' with incomplete return type 'exception_ptr' 129 | errors[0] = std::current_exception(); | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/clang23/bin/../include/c++/v1/__exception/operations.h:40:59: note: 'current_exception' declared here 40 | [[__nodiscard__]] _LIBCPP_EXPORTED_FROM_ABI exception_ptr current_exception() _NOEXCEPT; | ^ /usr/local/clang23/bin/../include/c++/v1/__exception/operations.h:38:33: note: forward declaration of 'std::exception_ptr' 38 | class _LIBCPP_EXPORTED_FROM_ABI exception_ptr; | ^ 4 errors generated. make: *** [/data/localhost/ripley/R/R-clang/etc/Makeconf:197: RcppExports.o] Error 1 ERROR: compilation failed for package ‘BiocNeighbors’ * removing ‘/data/localhost/ripley/R/test-clang/BiocNeighbors’ * restoring previous ‘/data/localhost/ripley/R/test-clang/BiocNeighbors’ The downloaded source packages are in ‘/tmp/RtmpqBHOEM/downloaded_packages’ Warning message: In install.packages(foo, configure.args = opts, Ncpus = 25) : installation of package ‘BiocNeighbors’ had non-zero exit status > > warnings() Warning message: In install.packages(foo, configure.args = opts, Ncpus = 25) : installation of package ‘BiocNeighbors’ had non-zero exit status >