* using log directory ‘/data/gannet/ripley/R/packages/tests-clang22/bfast.Rcheck’
* using R Under development (unstable) (2026-02-24 r89473)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    clang version 22.1.0 (https://github.com/llvm/llvm-project 4434dabb69916856b824f68a64b029c67175e532)
    flang version 22.1.0 (https://github.com/llvm/llvm-project 4434dabb69916856b824f68a64b029c67175e532)
* running under: Fedora Linux 42 (Workstation Edition)
* using session charset: UTF-8
* current time: 2026-02-24 18:41:36 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘bfast/DESCRIPTION’ ... OK
* this is package ‘bfast’ version ‘1.7.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘bfast’ can be installed ... [31s/61s] OK
* used C++ compiler: ‘clang version 22.1.0 (https://github.com/llvm/llvm-project 4434dabb69916856b824f68a64b029c67175e532)’
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [5s/15s] OK
* checking whether the package can be loaded with stated dependencies ... [4s/11s] OK
* checking whether the package can be unloaded cleanly ... [4s/12s] OK
* checking whether the namespace can be loaded with stated dependencies ... [4s/12s] OK
* checking whether the namespace can be unloaded cleanly ... [4s/13s] OK
* checking loading without being on the library search path ... [4s/14s] OK
* checking whether startup messages can be suppressed ... [4s/12s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [29s/88s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... [7s/13s] OK
* checking for differences from example reference output ... NOTE
Comparing ‘bfast-Ex.Rout’ to ‘bfast-Ex.Rout.save’:
624c624
< -0.153442 -0.030025 -0.001339  0.020911  0.213985 
---
> -0.153435 -0.030022 -0.001384  0.021004  0.214001 
628,630c628,630
< (Intercept) 0.0003619  0.0060051   0.060   0.9521  
< lag1        0.2697707  0.1045787   2.580   0.0116 *
< lag2        0.2204647  0.1045724   2.108   0.0379 *
---
> (Intercept) 0.0003608  0.0060051   0.060   0.9522  
> lag1        0.2697747  0.1045785   2.580   0.0116 *
> lag2        0.2204984  0.1045727   2.109   0.0379 *
636c636
< F-statistic: 8.444 on 2 and 87 DF,  p-value: 0.000445
---
> F-statistic: 8.446 on 2 and 87 DF,  p-value: 0.0004445
645c645
< 0.0003618779 0.2697706795 0.2204647235 
---
> 0.0003608327 0.2697746828 0.2204983802 
* checking PDF version of manual ... [8s/18s] OK
* checking HTML version of manual ... [4s/14s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 NOTE
See
  ‘/data/gannet/ripley/R/packages/tests-clang22/bfast.Rcheck/00check.log’
for details.

Time 7:22.33, 148.86 + 15.77