* installing *source* package ‘spNetwork’ ... ** package ‘spNetwork’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘clang version 19.1.0’ using C++17 make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-clang-trunk/spNetwork/src' /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/clang19/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/clang19/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c base_kernel_funtions.cpp -o base_kernel_funtions.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/clang19/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c border_correction.cpp -o border_correction.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/clang19/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c bw_selection_nkde.cpp -o bw_selection_nkde.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/clang19/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c bw_selection_tnkde.cpp -o bw_selection_tnkde.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/clang19/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c geometrical_functions.cpp -o geometrical_functions.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/clang19/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c k_and_g_func.cpp -o k_and_g_func.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/clang19/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c matrices_functions.cpp -o matrices_functions.o bw_selection_nkde.cpp:37:7: warning: unused variable 'depth' [-Wunused-variable] 37 | int depth = 0; | ^~~~~ bw_selection_nkde.cpp:145:7: warning: unused variable 'depth' [-Wunused-variable] 145 | int depth = 0; | ^~~~~ bw_selection_nkde.cpp:267:7: warning: unused variable 'depth' [-Wunused-variable] 267 | int depth = 0; | ^~~~~ bw_selection_tnkde.cpp:41:7: warning: unused variable 'depth' [-Wunused-variable] 41 | int depth = 0; | ^~~~~ bw_selection_tnkde.cpp:172:8: warning: unused variable 'depth' [-Wunused-variable] 172 | int depth = 0; | ^~~~~ bw_selection_tnkde.cpp:188:11: warning: unused variable 'bw_net' [-Wunused-variable] 188 | double bw_net, bw_time; | ^~~~~~ bw_selection_tnkde.cpp:188:19: warning: unused variable 'bw_time' [-Wunused-variable] 188 | double bw_net, bw_time; | ^~~~~~~ bw_selection_tnkde.cpp:325:7: warning: unused variable 'depth' [-Wunused-variable] 325 | int depth = 0; | ^~~~~ bw_selection_tnkde.cpp:475:8: warning: unused variable 'depth' [-Wunused-variable] 475 | int depth = 0; | ^~~~~ bw_selection_tnkde.cpp:489:11: warning: unused variable 'bw_net' [-Wunused-variable] 489 | double bw_net, bw_time; | ^~~~~~ bw_selection_tnkde.cpp:489:19: warning: unused variable 'bw_time' [-Wunused-variable] 489 | double bw_net, bw_time; | ^~~~~~~ bw_selection_tnkde.cpp:643:7: warning: unused variable 'depth' [-Wunused-variable] 643 | int depth = 0; | ^~~~~ bw_selection_tnkde.cpp:846:8: warning: unused variable 'depth' [-Wunused-variable] 846 | int depth = 0; | ^~~~~ bw_selection_tnkde.cpp:856:8: warning: unused variable 'n_bw_net' [-Wunused-variable] 856 | int n_bw_net = bws_net.n_rows; | ^~~~~~~~ bw_selection_tnkde.cpp:857:8: warning: unused variable 'n_bw_time' [-Wunused-variable] 857 | int n_bw_time = bws_time.n_cols; | ^~~~~~~~~ bw_selection_tnkde.cpp:866:19: warning: unused variable 'bw_time' [-Wunused-variable] 866 | double bw_net, bw_time; | ^~~~~~~ bw_selection_tnkde.cpp:997:8: warning: unused variable 'n_net' [-Wunused-variable] 997 | int n_net = bws_net.n_rows; | ^~~~~ k_and_g_func.cpp:295:13: warning: unused variable 'dtime' [-Wunused-variable] 295 | float dtime = breaks_time[j]; | ^~~~~ 3 warnings generated. /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/clang19/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c nkde_continuous.cpp -o nkde_continuous.o 14 warnings generated. 1 warning generated. In file included from geometrical_functions.cpp:10: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/geometry.hpp:17: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/geometry/geometry.hpp:57: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/geometry/strategies/strategies.hpp:121: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/geometry/strategies/transform/matrix_transformers.hpp:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/qvm/mat_operations.hpp:11: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/qvm/mat_operations2.hpp:6: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/qvm/gen/mat_operations2.hpp:12: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/qvm/deduce_mat.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/qvm/deduce_scalar.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/qvm/scalar_traits.hpp:9: /data/gannet/ripley/R/test-clang/BH/include/boost/qvm/quat_traits.hpp:82:30: error: a template argument list is expected after a name prefixed by the template keyword [-Wmissing-template-arg-list-after-template-kw] 82 | quat_traits::template write_element_idx(i, q) = s; | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/qvm/quat_traits.hpp:92:30: error: a template argument list is expected after a name prefixed by the template keyword [-Wmissing-template-arg-list-after-template-kw] 92 | quat_traits::template write_element_idx(i, q, s); | ^ geometrical_functions.cpp:260:22: warning: unused variable 'x3' [-Wunused-variable] 260 | double x2,y2,x1,y1,x3,y3,dd; | ^~ geometrical_functions.cpp:260:25: warning: unused variable 'y3' [-Wunused-variable] 260 | double x2,y2,x1,y1,x3,y3,dd; | ^~ geometrical_functions.cpp:324:13: warning: unused variable 'dd' [-Wunused-variable] 324 | double d, dd, totald, dt, t; | ^~ geometrical_functions.cpp:324:17: warning: unused variable 'totald' [-Wunused-variable] 324 | double d, dd, totald, dt, t; | ^~~~~~ geometrical_functions.cpp:324:25: warning: unused variable 'dt' [-Wunused-variable] 324 | double d, dd, totald, dt, t; | ^~ geometrical_functions.cpp:324:29: warning: unused variable 't' [-Wunused-variable] 324 | double d, dd, totald, dt, t; | ^ geometrical_functions.cpp:326:7: warning: unused variable 'j' [-Wunused-variable] 326 | int j; | ^ geometrical_functions.cpp:327:10: warning: unused variable 'x2' [-Wunused-variable] 327 | double x2,y2,x1,y1,x3,y3; | ^~ geometrical_functions.cpp:327:13: warning: unused variable 'y2' [-Wunused-variable] 327 | double x2,y2,x1,y1,x3,y3; | ^~ geometrical_functions.cpp:327:16: warning: unused variable 'x1' [-Wunused-variable] 327 | double x2,y2,x1,y1,x3,y3; | ^~ geometrical_functions.cpp:327:19: warning: unused variable 'y1' [-Wunused-variable] 327 | double x2,y2,x1,y1,x3,y3; | ^~ geometrical_functions.cpp:327:22: warning: unused variable 'x3' [-Wunused-variable] 327 | double x2,y2,x1,y1,x3,y3; | ^~ geometrical_functions.cpp:327:25: warning: unused variable 'y3' [-Wunused-variable] 327 | double x2,y2,x1,y1,x3,y3; | ^~ geometrical_functions.cpp:440:31: warning: unused variable 'diff' [-Wunused-variable] 440 | float start_dist, end_dist, diff, line_length; | ^~~~ geometrical_functions.cpp:440:37: warning: unused variable 'line_length' [-Wunused-variable] 440 | float start_dist, end_dist, diff, line_length; | ^~~~~~~~~~~ geometrical_functions.cpp:973:9: warning: unused variable 'j' [-Wunused-variable] 973 | int i,j; | ^ geometrical_functions.cpp:1040:9: warning: unused variable 'j' [-Wunused-variable] 1040 | int i,j; | ^ 17 warnings and 2 errors generated. make[2]: *** [/data/gannet/ripley/R/clang19/etc/Makeconf:202: geometrical_functions.o] Error 1 /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/clang19/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c nkde_discontinuous.cpp -o nkde_discontinuous.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/clang19/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c spatial_indexing.cpp -o spatial_indexing.o /usr/local/clang19/bin/clang++ -stdlib=libc++ -std=gnu++17 -I"/data/gannet/ripley/R/clang19/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c spatial_indexing_export.cpp -o spatial_indexing_export.o In file included from spatial_indexing.cpp:1: In file included from ./spatial_indexing.h:11: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/geometry.hpp:17: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/geometry/geometry.hpp:57: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/geometry/strategies/strategies.hpp:121: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/geometry/strategies/transform/matrix_transformers.hpp:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/qvm/mat_operations.hpp:11: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/qvm/mat_operations2.hpp:6: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/qvm/gen/mat_operations2.hpp:12: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/qvm/deduce_mat.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/qvm/deduce_scalar.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/qvm/scalar_traits.hpp:9: /data/gannet/ripley/R/test-clang/BH/include/boost/qvm/quat_traits.hpp:82:30: error: a template argument list is expected after a name prefixed by the template keyword [-Wmissing-template-arg-list-after-template-kw] 82 | quat_traits::template write_element_idx(i, q) = s; | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/qvm/quat_traits.hpp:92:30: error: a template argument list is expected after a name prefixed by the template keyword [-Wmissing-template-arg-list-after-template-kw] 92 | quat_traits::template write_element_idx(i, q, s); | ^ In file included from spatial_indexing_export.cpp:5: In file included from ./spatial_indexing.h:11: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/geometry.hpp:17: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/geometry/geometry.hpp:57: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/geometry/strategies/strategies.hpp:121: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/geometry/strategies/transform/matrix_transformers.hpp:29: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/qvm/mat_operations.hpp:11: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/qvm/mat_operations2.hpp:6: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/qvm/gen/mat_operations2.hpp:12: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/qvm/deduce_mat.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/qvm/deduce_scalar.hpp:9: In file included from /data/gannet/ripley/R/test-clang/BH/include/boost/qvm/scalar_traits.hpp:9: /data/gannet/ripley/R/test-clang/BH/include/boost/qvm/quat_traits.hpp:82:30: error: a template argument list is expected after a name prefixed by the template keyword [-Wmissing-template-arg-list-after-template-kw] 82 | quat_traits::template write_element_idx(i, q) = s; | ^ /data/gannet/ripley/R/test-clang/BH/include/boost/qvm/quat_traits.hpp:92:30: error: a template argument list is expected after a name prefixed by the template keyword [-Wmissing-template-arg-list-after-template-kw] 92 | quat_traits::template write_element_idx(i, q, s); | ^ 2 errors generated. make[2]: *** [/data/gannet/ripley/R/clang19/etc/Makeconf:202: spatial_indexing.o] Error 1 2 errors generated. make[2]: *** [/data/gannet/ripley/R/clang19/etc/Makeconf:202: spatial_indexing_export.o] Error 1 make[2]: Target 'all' not remade because of errors. make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang-trunk/spNetwork/src' ERROR: compilation failed for package ‘spNetwork’ * removing ‘/data/gannet/ripley/R/packages/tests-clang-trunk/spNetwork.Rcheck/spNetwork’