* using log directory ‘/data/gannet/ripley/R/packages/tests-clang/astrochron.Rcheck’
* using R Under development (unstable) (2024-04-12 r86412)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    clang version 18.1.2
    flang-new version 18.1.2
* running under: Fedora Linux 36 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘astrochron/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘astrochron’ version ‘1.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘astrochron’ can be installed ... [50s/63s] OK
* used C compiler: ‘clang version 18.1.2’
* used Fortran compiler: ‘flang-new version 18.1.2’
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [103s/144s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking usage of KIND in Fortran files ... OK
* checking examples ... ERROR
Running examples in ‘astrochron-Ex.R’ failed
The error most likely occurred in:

> ### Name: asm
> ### Title: Average Spectral Misfit
> ### Aliases: asm
> 
> ### ** Examples
> 
> ## These frequencies are from modelA (type '?astrochron' for more information). 
> ## They are for an 8 meter window, centered at 22 meters height. Units are cycles/m . 
> freq <- c(0.1599833,0.5332776,1.5998329,2.6797201,3.2796575,3.8795948,5.5194235,6.5459830)
> freq <- data.frame(freq)
> 
> ## Rayleigh frequency in cycles/m
> rayleigh <- 0.1245274
> 
> ## Nyquist frequency in cycles/m
> nyquist <- 6.66597
> 
> ## orbital target in 1/ky. Predicted periods for 94 Ma (see Meyers et al., 2012)
> target <- c(1/405.47,1/126.98,1/96.91,1/37.66,1/22.42,1/18.33)
> 
> ## percent uncertainty in orbital target
> fper=c(0.023,0.046,0.042,0.008,0.035,0.004)
> 
> asm(freq=freq,target=target,fper=fper,rayleigh=rayleigh,nyquist=nyquist,sedmin=0.5,sedmax=3,
+     numsed=100,linLog=1,iter=100000,output=FALSE)

----- PERFORMING AVERAGE SPECTRAL MISFIT ANALYSIS -----

 *** caught segfault ***
address 0x7fff67930540, cause 'memory not mapped'

Traceback:
 1: asm1.8(freq[, 1], numfreq, target[, 1], numtarg, fper[, 1], rayleigh,     nyquist, sedmin, sedmax, numsed, linLog, ispecgen, irepl,     isetfreq, iter)
 2: asm(freq = freq, target = target, fper = fper, rayleigh = rayleigh,     nyquist = nyquist, sedmin = 0.5, sedmax = 3, numsed = 100,     linLog = 1, iter = 1e+05, output = FALSE)
An irrecoverable exception occurred. R is aborting now ...
* checking PDF version of manual ... [15s/24s] OK
* checking HTML version of manual ... [9s/15s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/gannet/ripley/R/packages/tests-clang/astrochron.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 5:29.79, 229.01 + 13.85