* using log directory ‘/data/gannet/ripley/R/packages/tests-clang/nlmixr.Rcheck’
* using R Under development (unstable) (2022-10-05 r83030)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘nlmixr/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘nlmixr’ version ‘2.0.7’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘nlmixr’ can be installed ... [367s/391s] WARNING
Found the following significant warnings:
  inner.cpp:100:15: warning: anonymous non-C-compatible type given name for linkage purposes by typedef declaration; add a tag name here [-Wnon-c-typedef-for-linkage]
  inner.cpp:310:15: warning: anonymous non-C-compatible type given name for linkage purposes by typedef declaration; add a tag name here [-Wnon-c-typedef-for-linkage]
  inner.cpp:436:15: warning: anonymous non-C-compatible type given name for linkage purposes by typedef declaration; add a tag name here [-Wnon-c-typedef-for-linkage]
  ./npde.h:29:15: warning: anonymous non-C-compatible type given name for linkage purposes by typedef declaration; add a tag name here [-Wnon-c-typedef-for-linkage]
  init.c:58:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  init.c:145:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /data/gannet/ripley/R/test-clang/RxODE/include/RxODE.h:49:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /data/gannet/ripley/R/test-clang/RxODE/include/RxODE.h:299:33: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /data/gannet/ripley/R/test-clang/RxODE/include/RxODE.h:301:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /data/gannet/ripley/R/test-clang/RxODE/include/RxODE.h:303:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /data/gannet/ripley/R/test-clang/RxODE/include/RxODE.h:304:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
  /data/gannet/ripley/R/test-clang/RxODE/include/RxODE.h:312:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See ‘/data/gannet/ripley/R/packages/tests-clang/nlmixr.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [60s/61s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 WARNING
See
  ‘/data/gannet/ripley/R/packages/tests-clang/nlmixr.Rcheck/00check.log’
for details.


Time 8:55.02, 483.22 + 24.51