* using log directory ‘/data/gannet/ripley/R/packages/tests-clang/Rpvt.Rcheck’ * using R Under development (unstable) (2022-10-13 r83096) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘Rpvt/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘Rpvt’ version ‘0.1.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘Rpvt’ can be installed ... [127s/93s] WARNING Found the following significant warnings: pvt_interface.cpp:72:9: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical] pvt_interface.cpp:74:16: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical] pvt_interface.cpp:76:16: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical] pvt_interface.cpp:82:9: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical] pvt_interface.cpp:86:16: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical] pvt_interface.cpp:89:16: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical] pvt_interface.cpp:194:9: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical] pvt_interface.cpp:196:16: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical] pvt_interface.cpp:198:16: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical] pvt_interface.cpp:204:9: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical] pvt_interface.cpp:208:16: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical] pvt_interface.cpp:211:16: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical] pvt_interface.cpp:384:9: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical] pvt_interface.cpp:386:16: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical] pvt_interface.cpp:388:16: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical] pvt_interface.cpp:394:9: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical] pvt_interface.cpp:398:16: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical] pvt_interface.cpp:401:16: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical] See ‘/data/gannet/ripley/R/packages/tests-clang/Rpvt.Rcheck/00install.out’ for details. * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [8s/11s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking re-building of vignette outputs ... [21s/25s] OK * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 WARNING, 1 NOTE See ‘/data/gannet/ripley/R/packages/tests-clang/Rpvt.Rcheck/00check.log’ for details. Time 3:10.56, 188.77 + 13.75