* using log directory ‘/data/gannet/ripley/R/packages/tests-OpenBLAS/tinyVAST.Rcheck’ * using R Under development (unstable) (2026-06-29 r90199) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7) GNU Fortran (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7) * running under: Fedora Linux 42 (Workstation Edition) * using session charset: UTF-8 * current time: 2026-07-01 15:44:12 UTC * using option ‘--no-stop-on-test-error’ * checking for file ‘tinyVAST/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘tinyVAST’ version ‘1.6.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘tinyVAST’ can be installed ... [302s/305s] OK * used C++ compiler: ‘g++ (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’ * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [36s/37s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [27s/28s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [79s/46s] [79s/47s] ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > > > library(testthat) > library(tinyVAST) > > # Run tests > testthat::test_check("tinyVAST") Starting 2 test processes. > test-SAR.R: > test-SAR.R: Attaching package: 'igraph' > test-SAR.R: > test-SAR.R: The following objects are masked from 'package:stats': > test-SAR.R: > test-SAR.R: decompose, spectrum > test-SAR.R: > test-SAR.R: The following object is masked from 'package:testthat': > test-SAR.R: > test-SAR.R: compare > test-SAR.R: > test-SAR.R: The following object is masked from 'package:base': > test-SAR.R: > test-SAR.R: union > test-SAR.R: > test-basic-fits.R: Read 0 records > test-basic-fits.R: NOTE: it is generally simpler to use specifyEquations() or cfa() > test-basic-fits.R: see ?specifyEquations > test-basic-fits.R: Running optimizer_loop #1 > test-basic-fits.R: Matching hessian patterns... > test-basic-fits.R: Done > test-basic-fits.R: outer mgc: 139.7797 > test-basic-fits.R: outer mgc: 50.0056 > test-basic-fits.R: outer mgc: 10.49566 > test-basic-fits.R: outer mgc: 42.55798 > test-basic-fits.R: outer mgc: 33.025 > test-basic-fits.R: outer mgc: 66.66318 > test-basic-fits.R: outer mgc: 14.40933 > test-basic-fits.R: outer mgc: 16.20354 > test-basic-fits.R: outer mgc: 6.049868 > test-basic-fits.R: outer mgc: 10.16643 > test-basic-fits.R: outer mgc: 6.303317 > test-basic-fits.R: outer mgc: 3.01656 > test-basic-fits.R: outer mgc: 8.557232 > test-basic-fits.R: outer mgc: 2.408678 > test-basic-fits.R: outer mgc: 0.09609061 > test-basic-fits.R: outer mgc: 0.0208441 > test-basic-fits.R: outer mgc: 0.02100458 > test-basic-fits.R: outer mgc: 3.435635e-05 > test-basic-fits.R: outer mgc: 8.373887e-07 > test-basic-fits.R: Running newton_loop #1 > test-basic-fits.R: outer mgc: 8.373887e-07 > test-basic-fits.R: outer mgc: 0.03589508 > test-basic-fits.R: outer mgc: 0.03589548 > test-basic-fits.R: outer mgc: 0.2249867 > test-basic-fits.R: outer mgc: 0.2253945 > test-basic-fits.R: outer mgc: 0.001990324 > test-basic-fits.R: outer mgc: 0.001989592 > test-basic-fits.R: outer mgc: 0.6192716 > test-basic-fits.R: outer mgc: 0.6193904 > test-basic-fits.R: outer mgc: 0.1341367 > test-basic-fits.R: outer mgc: 0.1342761 > test-basic-fits.R: Running sdreport > test-basic-fits.R: outer mgc: 0.03589528 > test-basic-fits.R: outer mgc: 0.03589528 > test-basic-fits.R: outer mgc: 0.2249863 > test-basic-fits.R: outer mgc: 0.2253948 > test-basic-fits.R: outer mgc: 0.001990341 > test-basic-fits.R: outer mgc: 0.001989574 > test-basic-fits.R: outer mgc: 0.6192713 > test-basic-fits.R: outer mgc: 0.6193908 > test-basic-fits.R: outer mgc: 0.1341364 > test-basic-fits.R: outer mgc: 0.1342765 > test-basic-fits.R: outer mgc: 1.16469e-11 > test-basic-fits.R: Read 0 records > test-basic-fits.R: NOTE: it is generally simpler to use specifyEquations() or cfa() > test-basic-fits.R: see ?specifyEquations > test-basic-fits.R: Running optimizer_loop #1 > test-basic-fits.R: Matching hessian patterns... > test-basic-fits.R: Done > test-basic-fits.R: outer mgc: 56573.54 > test-basic-fits.R: outer mgc: 1272.962 > test-basic-fits.R: outer mgc: 24819.95 > test-basic-fits.R: outer mgc: 26007.69 > test-basic-fits.R: outer mgc: 19429.4 > test-basic-fits.R: outer mgc: 5031.503 > test-basic-fits.R: outer mgc: 2811.473 > test-basic-fits.R: outer mgc: 475.8342 > test-basic-fits.R: outer mgc: 6192.112 > test-basic-fits.R: outer mgc: 5542.985 > test-basic-fits.R: outer mgc: 61.50294 > test-basic-fits.R: outer mgc: 2566.65 > test-basic-fits.R: outer mgc: 634.0082 > test-basic-fits.R: outer mgc: 1073.525 > test-basic-fits.R: outer mgc: 631.7263 > test-basic-fits.R: outer mgc: 597.6543 > test-basic-fits.R: outer mgc: 2471.182 > test-basic-fits.R: outer mgc: 433.9127 > test-basic-fits.R: outer mgc: 4514.008 > test-basic-fits.R: outer mgc: 4085.049 > test-basic-fits.R: outer mgc: 1283.438 > test-basic-fits.R: outer mgc: 326.7172 > test-basic-fits.R: outer mgc: 92.07727 > test-basic-fits.R: outer mgc: 12.53704 > test-basic-fits.R: outer mgc: 4.53008 > test-basic-fits.R: outer mgc: 0.1280528 > test-basic-fits.R: outer mgc: 0.04303635 > test-basic-fits.R: outer mgc: 0.0197487 > test-basic-fits.R: Running newton_loop #1 > test-basic-fits.R: outer mgc: 0.0197487 > test-basic-fits.R: outer mgc: 10.43484 > test-basic-fits.R: outer mgc: 10.39534 > test-basic-fits.R: outer mgc: 420.1428 > test-basic-fits.R: outer mgc: 420.1033 > test-basic-fits.R: outer mgc: 4715.533 > test-basic-fits.R: outer mgc: 4715.494 > test-basic-fits.R: outer mgc: 47003.36 > test-basic-fits.R: outer mgc: 47003.32 > test-basic-fits.R: outer mgc: 0.4212049 > test-basic-fits.R: outer mgc: 0.462247 > test-basic-fits.R: outer mgc: 0.6366283 > test-basic-fits.R: outer mgc: 0.637081 > test-basic-fits.R: outer mgc: 0.4781679 > test-basic-fits.R: outer mgc: 0.4367504 > test-basic-fits.R: Running sdreport > test-basic-fits.R: outer mgc: 10.41513 > test-basic-fits.R: outer mgc: 10.41513 > test-basic-fits.R: outer mgc: 420.1231 > test-basic-fits.R: outer mgc: 420.1231 > test-basic-fits.R: outer mgc: 4715.514 > test-basic-fits.R: outer mgc: 4715.514 > test-basic-fits.R: outer mgc: 47003.34 > test-basic-fits.R: outer mgc: 47003.34 > test-basic-fits.R: outer mgc: 0.4409389 > test-basic-fits.R: outer mgc: 0.4424835 > test-basic-fits.R: outer mgc: 0.6367749 > test-basic-fits.R: outer mgc: 0.6369318 > test-basic-fits.R: outer mgc: 0.4584172 > test-basic-fits.R: outer mgc: 0.4564972 > test-basic-fits.R: outer mgc: 1.668512e-08 > test-basic-fits.R: Read 0 records > test-basic-fits.R: NOTE: it is generally simpler to use specifyEquations() or cfa() > test-basic-fits.R: see ?specifyEquations > test-basic-fits.R: Running optimizer_loop #1 > test-deviance-residuals.R: Student-t degrees of freedom parameter will be estimated. This used to be fixed at 3 by default. To fix it, supply a value to `df` (e.g., `df = 3`). > test-basic-fits.R: Matching hessian patterns... > test-basic-fits.R: Done > test-basic-fits.R: outer mgc: 56573.54 > test-basic-fits.R: outer mgc: 1272.962 > test-basic-fits.R: outer mgc: 24819.95 > test-deviance-residuals.R: Student-t degrees of freedom parameter fixed at 7.81030735915656. To estimate it, set `df = NULL`. > test-basic-fits.R: outer mgc: 26007.69 > test-basic-fits.R: outer mgc: 19429.4 > test-basic-fits.R: outer mgc: 5031.503 > test-basic-fits.R: outer mgc: 2811.473 > test-basic-fits.R: outer mgc: 475.8342 > test-basic-fits.R: outer mgc: 6192.112 > test-basic-fits.R: outer mgc: 5542.985 > test-basic-fits.R: outer mgc: 61.50294 > test-basic-fits.R: outer mgc: 2566.65 > test-basic-fits.R: outer mgc: 634.0082 > test-basic-fits.R: outer mgc: > test-basic-fits.R: 1073.525 > test-basic-fits.R: outer mgc: 631.7263 > test-basic-fits.R: outer mgc: 597.6543 > test-basic-fits.R: outer mgc: 2471.182 > test-basic-fits.R: outer mgc: 433.9127 > test-basic-fits.R: outer mgc: 4514.008 > test-basic-fits.R: outer mgc: 4085.049 > test-basic-fits.R: outer mgc: 1283.438 > test-basic-fits.R: outer mgc: 326.7172 > test-deviance-residuals.R: Student-t degrees of freedom parameter fixed at 7.81030735915656. To estimate it, set `df = NULL`. > test-basic-fits.R: outer mgc: 92.07727 > test-basic-fits.R: outer mgc: 12.53704 > test-basic-fits.R: outer mgc: 4.53008 > test-basic-fits.R: outer mgc: 0.1280528 > test-basic-fits.R: outer mgc: 0.04303635 > test-basic-fits.R: outer mgc: 0.0197487 > test-basic-fits.R: Running newton_loop #1 > test-basic-fits.R: outer mgc: 0.0197487 > test-basic-fits.R: outer mgc: 10.43484 > test-basic-fits.R: outer mgc: 10.39534 > test-basic-fits.R: outer mgc: 420.1428 > test-basic-fits.R: outer mgc: 420.1033 > test-basic-fits.R: outer mgc: 4715.533 > test-basic-fits.R: outer mgc: 4715.494 > test-basic-fits.R: outer mgc: 47003.36 > test-dsem.R: > test-dsem.R: Attaching package: 'dsem' > test-dsem.R: > test-dsem.R: The following objects are masked from 'package:tinyVAST': > test-dsem.R: > test-dsem.R: bering_sea, cAIC, lognormal, make_dsem_ram, tweedie > test-dsem.R: > test-basic-fits.R: outer mgc: 47003.32 > test-basic-fits.R: outer mgc: 0.4212049 > test-basic-fits.R: outer mgc: 0.462247 > test-basic-fits.R: outer mgc: 0.6366283 > test-basic-fits.R: outer mgc: 0.637081 > test-basic-fits.R: outer mgc: 0.4781679 > test-basic-fits.R: outer mgc: 0.4367504 > test-basic-fits.R: Running sdreport > test-basic-fits.R: outer mgc: 10.41513 > test-basic-fits.R: outer mgc: 10.41513 > test-basic-fits.R: outer mgc: 420.1231 > test-basic-fits.R: outer mgc: 420.1231 > test-basic-fits.R: outer mgc: 4715.514 > test-basic-fits.R: outer mgc: 4715.514 > test-basic-fits.R: outer mgc: 47003.34 > test-basic-fits.R: outer mgc: 47003.34 > test-basic-fits.R: outer mgc: 0.4409389 > test-basic-fits.R: outer mgc: 0.4424835 > test-basic-fits.R: outer mgc: 0.6367749 > test-basic-fits.R: outer mgc: 0.6369318 > test-basic-fits.R: outer mgc: 0.4584172 > test-basic-fits.R: outer mgc: 0.4564972 > test-basic-fits.R: outer mgc: 1.668512e-08 > test-basic-fits.R: Read 0 records > test-basic-fits.R: NOTE: it is generally simpler to use specifyEquations() or cfa() > test-basic-fits.R: see ?specifyEquations > test-dsem.R: Read 1 record > test-dsem.R: List of estimated fixed and random effects: > test-dsem.R: Coefficient_name Number_of_coefficients Type > test-dsem.R: 1 beta_z 3 Fixed > test-dsem.R: 2 mu_j 2 Fixed > test-dsem.R: 3 x_tj 200 Random > test-dsem.R: Running nlminb_loop #1 > test-dsem.R: Running newton_loop #1 > test-basic-fits.R: Running optimizer_loop #1 > test-basic-fits.R: Matching hessian patterns... > test-basic-fits.R: Done > test-basic-fits.R: outer mgc: 329.6031 > test-basic-fits.R: outer mgc: 68.05233 > test-basic-fits.R: outer mgc: 18.19656 > test-basic-fits.R: outer mgc: 29.92053 > test-basic-fits.R: outer mgc: 43.10927 > test-basic-fits.R: outer mgc: 37.2851 > test-basic-fits.R: outer mgc: 39.29585 > test-basic-fits.R: outer mgc: 13.80125 > test-basic-fits.R: outer mgc: 56.22918 > test-basic-fits.R: outer mgc: 25.52038 > test-basic-fits.R: outer mgc: 7.92955 > test-basic-fits.R: outer mgc: 4.087912 > test-basic-fits.R: outer mgc: 3.712102 > test-basic-fits.R: outer mgc: 0.7345282 > test-basic-fits.R: outer mgc: 0.1433986 > test-basic-fits.R: outer mgc: 0.06908389 > test-basic-fits.R: outer mgc: 0.004477842 > test-basic-fits.R: outer mgc: 0.0009683881 > test-basic-fits.R: outer mgc: 0.0002287949 > test-basic-fits.R: Running newton_loop #1 > test-basic-fits.R: outer mgc: 0.0002287949 > test-basic-fits.R: outer mgc: 0.03431302 > test-basic-fits.R: outer mgc: 0.03422994 > test-basic-fits.R: outer mgc: 0.0006446274 > test-basic-fits.R: outer mgc: 0.0006324006 > test-basic-fits.R: outer mgc: 0.0006470594 > test-basic-fits.R: outer mgc: 0.0006489578 > test-basic-fits.R: outer mgc: 0.0006101428 > test-basic-fits.R: outer mgc: 0.0006186895 > test-basic-fits.R: outer mgc: 0.222149 > test-basic-fits.R: outer mgc: 0.2229985 > test-basic-fits.R: outer mgc: 0.6365467 > test-basic-fits.R: outer mgc: 0.6371612 > test-basic-fits.R: outer mgc: 0.1350688 > test-basic-fits.R: outer mgc: 0.1356611 > test-basic-fits.R: Running sdreport > test-basic-fits.R: outer mgc: 0.0342717 > test-basic-fits.R: outer mgc: 0.0342717 > test-basic-fits.R: outer mgc: 0.0006385136 > test-basic-fits.R: outer mgc: 0.0006385136 > test-basic-fits.R: outer mgc: 0.0006480083 > test-basic-fits.R: outer mgc: 0.0006480082 > test-basic-fits.R: outer mgc: 0.0006144158 > test-basic-fits.R: outer mgc: 0.0006144158 > test-basic-fits.R: outer mgc: 0.222378 > test-dsem.R: Read 1 record > test-basic-fits.R: outer mgc: 0.2227699 > test-basic-fits.R: outer mgc: 0.6367749 > test-basic-fits.R: outer mgc: 0.6369318 > test-basic-fits.R: outer mgc: 0.1352972 > test-basic-fits.R: outer mgc: 0.1354319 > test-dsem.R: List of estimated fixed and random effects: > test-dsem.R: Coefficient_name Number_of_coefficients Type > test-dsem.R: 1 beta_z 3 Fixed > test-dsem.R: 2 mu_j 2 Fixed > test-dsem.R: 3 x_tj 200 Random > test-dsem.R: Running nlminb_loop #1 > test-dsem.R: Running newton_loop #1 > test-basic-fits.R: outer mgc: 7.338311e-10 > test-basic-fits.R: Read 0 records > test-basic-fits.R: NOTE: it is generally simpler to use specifyEquations() or cfa() > test-basic-fits.R: see ?specifyEquations > test-basic-fits.R: Running optimizer_loop #1 > test-basic-fits.R: Matching hessian patterns... > test-basic-fits.R: Done > test-basic-fits.R: outer mgc: 329.6031 > test-basic-fits.R: outer mgc: 68.05233 > test-basic-fits.R: outer mgc: 18.19656 > test-basic-fits.R: outer mgc: 29.92053 > test-basic-fits.R: outer mgc: 43.10927 > test-basic-fits.R: outer mgc: 37.2851 > test-basic-fits.R: outer mgc: 39.29585 > test-basic-fits.R: outer mgc: 13.80125 > test-basic-fits.R: outer mgc: 56.22918 > test-basic-fits.R: outer mgc: 25.52038 > test-basic-fits.R: outer mgc: 7.92955 > test-basic-fits.R: outer mgc: 4.087912 > test-basic-fits.R: outer mgc: 3.712102 > test-basic-fits.R: outer mgc: 0.7345282 > test-basic-fits.R: outer mgc: 0.1433986 > test-basic-fits.R: outer mgc: 0.06908389 > test-basic-fits.R: outer mgc: 0.004477842 > test-basic-fits.R: outer mgc: 0.0009683881 > test-basic-fits.R: outer mgc: 0.0002287949 > test-basic-fits.R: Running newton_loop #1 > test-basic-fits.R: outer mgc: 0.0002287949 > test-basic-fits.R: outer mgc: 0.03431302 > test-basic-fits.R: outer mgc: 0.03422994 > test-basic-fits.R: outer mgc: 0.0006446274 > test-basic-fits.R: outer mgc: 0.0006324006 > test-basic-fits.R: outer mgc: 0.0006470594 > test-basic-fits.R: outer mgc: 0.0006489578 > test-basic-fits.R: outer mgc: 0.0006101428 > test-basic-fits.R: outer mgc: 0.0006186895 > test-basic-fits.R: outer mgc: 0.222149 > test-basic-fits.R: outer mgc: 0.2229985 > test-basic-fits.R: outer mgc: 0.6365467 > test-basic-fits.R: outer mgc: 0.6371612 > test-basic-fits.R: outer mgc: 0.1350688 > test-basic-fits.R: outer mgc: 0.1356611 > test-basic-fits.R: Running sdreport > test-basic-fits.R: outer mgc: 0.0342717 > test-basic-fits.R: outer mgc: 0.0342717 > test-basic-fits.R: outer mgc: 0.0006385136 > test-basic-fits.R: outer mgc: 0.0006385136 > test-basic-fits.R: outer mgc: 0.0006480083 > test-basic-fits.R: outer mgc: 0.0006480082 > test-basic-fits.R: outer mgc: 0.0006144158 > test-basic-fits.R: outer mgc: 0.0006144158 > test-basic-fits.R: outer mgc: 0.222378 > test-basic-fits.R: outer mgc: 0.2227699 > test-basic-fits.R: outer mgc: 0.6367749 > test-basic-fits.R: outer mgc: 0.6369318 > test-basic-fits.R: outer mgc: 0.1352972 > test-basic-fits.R: outer mgc: 0.1354319 > test-basic-fits.R: outer mgc: 7.338311e-10 Saving _problems/test-basic-fits-173.R > test-mesh.R: Linking to GEOS 3.13.0, GDAL 3.10.3, PROJ 9.6.2; sf_use_s2() is TRUE > test-index-standardization.R: Loading required package: VAST > test-sfnetworks.R: Linking to GEOS 3.13.0, GDAL 3.10.3, PROJ 9.6.2; sf_use_s2() is TRUE > test-platform.R: Call: > test-platform.R: tinyVAST(formula = n ~ s(w), data = Data, space_term = "", spatial_domain = mesh, > test-platform.R: control = tinyVASTcontrol(getJointPrecision = TRUE)) > test-platform.R: > test-platform.R: Run time: > test-platform.R: Time difference of 2.114767 secs > test-platform.R: > test-platform.R: Family: > test-platform.R: $obs > test-platform.R: > test-platform.R: Family: gaussian > test-platform.R: Link function: identity > test-platform.R: > test-platform.R: > test-platform.R: > test-platform.R: > test-platform.R: sdreport(.) result > test-platform.R: Estimate Std. Error > test-platform.R: alpha_j 0.0008856969 0.1179880 > test-platform.R: theta_z 1.0051426964 0.1053589 > test-platform.R: log_lambda -2.4633570302 0.6907046 > test-platform.R: log_sigma -0.2413211707 0.1593839 > test-platform.R: log_kappa 0.1658324137 0.2109340 > test-platform.R: Maximum gradient component: 7.76853e-05 > test-platform.R: > test-platform.R: Proportion conditional deviance explained: > test-platform.R: [1] 0.869631 > test-platform.R: > test-platform.R: space_term: > test-platform.R: heads to from parameter start Estimate Std_Error z_value p_value > test-platform.R: 1 2 n n 1 1.005143 0.1053589 9.540183 1.425808e-21 > test-platform.R: > test-platform.R: Fixed terms: > test-platform.R: Estimate Std_Error z_value p_value > test-platform.R: (Intercept) 0.0008856969 0.117988 0.007506668 0.9940106 > test-platform.R: > test-platform.R: Sanity check: > test-platform.R: > test-smooths.R: Gu & Wahba 4 term additive model > test-smooths.R: Gu & Wahba 4 term additive model > test-smooths.R: Gu & Wahba 4 term additive model [ FAIL 1 | WARN 5 | SKIP 20 | PASS 119 ] ══ Skipped tests (20) ══════════════════════════════════════════════════════════ • On CRAN (19): 'test-deviance-residuals.R:3:3', 'test-deviance-residuals.R:37:3', 'test-deviance-residuals.R:116:3', 'test-deviance-residuals.R:151:3', 'test-deviance-residuals.R:189:3', 'test-deviance-residuals.R:228:3', 'test-deviance-residuals.R:255:3', 'test-deviance-residuals.R:313:3', 'test-deviance-residuals.R:352:3', 'test-basic-fits.R:41:3', 'test-smooths.R:2:3', 'test-smooths.R:151:3', 'test-smooths.R:167:3', 'test-smooths.R:177:3', 'test-smooths.R:194:3', 'test-smooths.R:214:3', 'test-smooths.R:231:3', 'test-smooths.R:248:3', 'test-smooths.R:268:3' • require(VAST) is not TRUE (1): 'test-index-standardization.R:77:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-basic-fits.R:173:3'): tinyVAST works as dsem ───────────────── Expected `as.numeric(fit1$opt$obj)` to equal 5.781919. Differences: `actual`: 295.9 `expected`: 5.8 [ FAIL 1 | WARN 5 | SKIP 20 | PASS 119 ] Error: ! Test failures. Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [299s/302s] OK * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/data/gannet/ripley/R/packages/tests-OpenBLAS/tinyVAST.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 14:26.55, 838.97 + 48.09