* using log directory ‘/data/gannet/ripley/R/packages/tests-OpenBLAS/structSSI.Rcheck’ * using R Under development (unstable) (2025-09-29 r88883) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2) GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2) * running under: Fedora Linux 42 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘structSSI/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘structSSI’ version ‘1.2.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘structSSI’ can be installed ... [50s/63s] OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [13s/17s] OK * checking whether the package can be loaded with stated dependencies ... [13s/16s] OK * checking whether the package can be unloaded cleanly ... [13s/15s] OK * checking whether the namespace can be loaded with stated dependencies ... [13s/16s] OK * checking whether the namespace can be unloaded cleanly ... [13s/16s] OK * checking loading without being on the library search path ... [14s/18s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [60s/73s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [19s/19s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [12s/12s] [12s/12s] ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(structSSI) > > test_check("structSSI") [ FAIL 1 | WARN 4 | SKIP 0 | PASS 51 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_gbh.R:93:5'): Adaptive GBH returns (2) ─────────────────────── result@p.vals$unadjp[1] is not strictly less than 0.005. Difference: 0.0145 [ FAIL 1 | WARN 4 | SKIP 0 | PASS 51 ] Error: Test failures Execution halted * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/data/gannet/ripley/R/packages/tests-OpenBLAS/structSSI.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 7:52.32, 363.61 + 30.18