* using log directory ‘/data/localhost/ripley/R/packages/tests-OpenBLAS/spCF.Rcheck’ * using R Under development (unstable) (2026-10-05 r90641) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2) GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2) * running under: Fedora Linux 44 (Server Edition) * using session charset: UTF-8 * current time: 2026-10-06 03:57:09 UTC * using option ‘--no-stop-on-test-error’ * checking for file ‘spCF/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘spCF’ version ‘0.2.2’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘spCF’ can be installed ... [44s/73s] OK * used C++ compiler: ‘g++ (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)’ * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [20s/39s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [8s/11s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [26s/41s] [26s/42s] ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(spCF) > > test_check("spCF") Saving _problems/test-predict-14.R Loading required package: shiny Attaching package: 'bslib' The following object is masked from 'package:utils': page terra 1.9.50 Attaching package: 'terra' The following objects are masked from 'package:testthat': compare, describe Linking to GEOS 3.14.1, GDAL 3.12.4, PROJ 9.8.1; sf_use_s2() is TRUE `shiny::dataTableOutput()` is deprecated as of shiny 1.8.1. Please use `DT::DTOutput()` instead. Since you have a suitable version of DT (>= v0.32.1), shiny::dataTableOutput() will automatically use DT::DTOutput() under-the-hood. If this happens to break your app, set `options(shiny.legacy.datatable = TRUE)` to get the legacy datatable implementation (or `FALSE` to squelch this message). See for more information. [ FAIL 1 | WARN 0 | SKIP 11 | PASS 369 ] ══ Skipped tests (11) ══════════════════════════════════════════════════════════ • On CRAN (10): 'test-add_learn.R:17:3', 'test-mapping.R:17:3', 'test-mapping.R:38:3', 'test-mapping.R:57:3', 'test-mapping.R:75:3', 'test-mapping.R:113:3', 'test-mapping.R:143:3', 'test-mapping.R:178:3', 'test-spCFmap.R:5:3', 'test-spCFmap.R:20:3' • lightgbm is installed, so the guard cannot be exercised (1): 'test-add_learn.R:43:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-predict.R:14:3'): predict.cf_lm agrees exactly with cf_lm(coords0 = ...) and is batch-invariant ── Expected `as.matrix(pa)` to be identical to `as.matrix(p)`. Differences: actual | expected [10] 1.708592705882297613 | 1.708592705882297613 [10] [11] 2.967599729412901954 | 2.967599729412901954 [11] [12] 1.247424140155612982 | 1.247424140155612982 [12] [13] 2.697749006465567145 - 2.697749006465567589 [13] [14] 1.841391285027628166 - 1.841391285027628388 [14] [15] 0.188769649700968878 | 0.188769649700968878 [15] [16] 1.581847686371486539 | 1.581847686371486539 [16] [17] -0.269900449263529629 | -0.269900449263529629 [17] actual | expected [37] -0.569972026941717558 | -0.569972026941717558 [37] [38] -0.148987974090024899 | -0.148987974090024899 [38] [39] 2.300158705242296708 | 2.300158705242296708 [39] [40] -0.249094023503620421 - -0.249094023503620643 [40] [41] 0.379786724652459329 | 0.379786724652459329 [41] [42] 0.321302957451516824 | 0.321302957451516824 [42] [43] 0.355047743333264609 | 0.355047743333264609 [43] actual | expected [51] 0.342184378405505474 | 0.342184378405505474 [51] [52] 0.369504460765786635 | 0.369504460765786635 [52] [53] 0.336109796097232960 | 0.336109796097232960 [53] [54] 0.342598284090665783 - 0.342598284090665728 [54] [55] 0.398746341931747572 | 0.398746341931747572 [55] [56] 0.365497813621252499 | 0.365497813621252499 [56] [57] 0.406408983233432664 | 0.406408983233432664 [57] actual | expected [90] 0.776850476418918912 | 0.776850476418918912 [90] [91] 2.086191180299335812 | 2.086191180299335812 [91] [92] 0.295643722323065017 | 0.295643722323065017 [92] [93] 1.831987544468468787 - 1.831987544468469231 [93] [94] 0.958916585521320308 - 0.958916585521320752 [94] [95] -0.838332862529756029 | -0.838332862529756029 [95] [96] 0.640387707662810057 | 0.640387707662810057 [96] [97] -1.316740617501718891 | -1.316740617501718891 [97] actual | expected [130] 0.999624448510887387 | 0.999624448510887387 [130] [131] 2.296930671665886159 | 2.296930671665886159 [131] [132] 0.523208704927777823 | 0.523208704927777823 [132] [133] 2.038985911263889506 - 2.038985911263889950 [133] [134] 1.169910987044701534 - 1.169910987044701756 [134] [135] -0.592758819452349872 | -0.592758819452349872 [135] [136] 0.865485135245698478 | 0.865485135245698478 [136] [137] -1.066447419394600082 | -1.066447419394600082 [137] actual | expected [157] -1.286915678898625126 | -1.286915678898625126 [157] [158] -0.929908353298858126 | -0.929908353298858126 [158] [159] 1.607499169103707048 | 1.607499169103707048 [159] [160] -0.941897037567158257 - -0.941897037567158479 [160] [161] -0.528000600563884315 | -0.528000600563884315 [161] [162] 0.705298125721120606 | 0.705298125721120606 [162] [163] 0.848134588280359480 | 0.848134588280359480 [163] actual | expected [170] 1.113607788440311941 | 1.113607788440311941 [170] [171] 2.404756513506471016 | 2.404756513506471016 [171] [172] 0.639643387690260745 | 0.639643387690260745 [172] [173] 2.144897589301113516 - 2.144897589301113960 [173] [174] 1.277867254853745527 - 1.277867254853745749 [174] [175] -0.467109717059098206 | -0.467109717059098206 [175] [176] 0.980657281993736030 | 0.980657281993736030 [176] [177] -0.938383739360701630 | -0.938383739360701630 [177] actual | expected [197] -1.171650106510048639 | -1.171650106510048639 [197] [198] -0.804357015681574028 | -0.804357015681574028 [198] [199] 1.718860498108429447 | 1.718860498108429447 [199] [200] -0.830512641107832961 - -0.830512641107833183 [200] [201] -0.390023300602681866 | -0.390023300602681866 [201] [202] 0.822028152499381104 | 0.822028152499381104 [202] [203] 0.977124165331192396 | 0.977124165331192396 [203] actual | expected [210] 1.245023279442568853 | 1.245023279442568853 [210] [211] 2.529072803562420368 | 2.529072803562420368 [211] [212] 0.773885119985505576 | 0.773885119985505576 [212] [213] 2.267006971082281552 - 2.267006971082281996 [213] [214] 1.402333917698341592 - 1.402333917698341814 [214] [215] -0.322244349056844959 | -0.322244349056844959 [215] [216] 1.113443391122041604 | 1.113443391122041604 [216] [217] -0.790734517977724649 | -0.790734517977724649 [217] actual | expected [237] -1.038756283601542707 | -1.038756283601542707 [237] [238] -0.659604364204774640 | -0.659604364204774640 [238] [239] 1.847252978438281623 | 1.847252978438281623 [239] [240] -0.702093565480153448 - -0.702093565480153670 [240] [241] -0.222943600747885884 | -0.222943600747885884 [241] [242] 0.963379069234511554 | 0.963379069234511554 [242] [243] 1.133320436921593677 | 1.133320436921593677 [243] actual | expected [250] 1.404157142759953070 | 1.404157142759953070 [250] [251] 2.679610090749879436 | 2.679610090749879436 [251] [252] 0.936441340075217177 | 0.936441340075217177 [252] [253] 2.414871865258273242 - 2.414871865258273687 [253] [254] 1.553053294551278274 - 1.553053294551278718 [254] [255] -0.146823738478315535 | -0.146823738478315535 [255] [256] 1.274236965603364968 | 1.274236965603364968 [256] [257] -0.611942879067564949 | -0.611942879067564949 [257] actual | expected [277] -0.877832276171675585 | -0.877832276171675585 [277] [278] -0.484320244507331021 | -0.484320244507331021 [278] [279] 2.002726212681569695 | 2.002726212681569695 [279] [280] -0.546588126414913944 - -0.546588126414914166 [280] [281] -0.102467382178723504 | -0.102467382178723504 [281] [282] 1.065303025013297544 | 1.065303025013297544 [282] [283] 1.245948938003218487 | 1.245948938003218487 [283] actual | expected [290] 1.518903854152432675 | 1.518903854152432675 [290] [291] 2.788158065936372498 | 2.788158065936372498 [291] [292] 1.053655811482126392 | 1.053655811482126392 [292] [293] 2.521492857065983362 - 2.521492857065983806 [293] [294] 1.661732569197587939 - 1.661732569197588383 [294] [295] -0.020333136448495243 | -0.020333136448495243 [295] [296] 1.390180445514833885 | 1.390180445514833885 [296] [297] -0.483021528440295222 | -0.483021528440295222 [297] actual | expected [317] -0.761794744927632772 | -0.761794744927632772 [317] [318] -0.357928062005656078 | -0.357928062005656078 [318] [319] 2.114833352966280167 | 2.114833352966280167 [319] [320] -0.434457764187790474 - -0.434457764187790696 [320] [321] 0.000475104448599425 | 0.000475104448599425 [321] [322] 1.152393287136175726 | 1.152393287136175726 [322] [323] 1.342185839394629765 | 1.342185839394629765 [323] actual | expected [330] 1.616950688152857918 | 1.616950688152857918 [330] [331] 2.880908308405542684 | 2.880908308405542684 [331] [332] 1.153811255424845195 | 1.153811255424845195 [332] [333] 2.612596563288768881 - 2.612596563288769325 [333] [334] 1.754595002213962252 - 1.754595002213962474 [334] [335] 0.087748419086563542 | 0.087748419086563542 [335] [336] 1.489249874088073744 | 1.489249874088073744 [336] [337] -0.372862987854085615 | -0.372862987854085615 [337] actual | expected [357] -0.662644952958522993 | -0.662644952958522993 [357] [358] -0.249930602328520990 | -0.249930602328520990 [358] [359] 2.210624770780087900 | 2.210624770780087900 [359] [360] -0.338646504080419075 - -0.338646504080419297 [360] [361] 0.096692970948733636 | 0.096692970948733636 [361] [362] 1.233794460635482704 | 1.233794460635482704 [362] [363] 1.432136156643015301 | 1.432136156643015301 [363] actual | expected [370] 1.708592705882297613 | 1.708592705882297613 [370] [371] 2.967599729412901954 | 2.967599729412901954 [371] [372] 1.247424140155612982 | 1.247424140155612982 [372] [373] 2.697749006465567145 - 2.697749006465567589 [373] [374] 1.841391285027628166 - 1.841391285027628388 [374] [375] 0.188769649700968878 | 0.188769649700968878 [375] [376] 1.581847686371486539 | 1.581847686371486539 [376] [377] -0.269900449263529629 | -0.269900449263529629 [377] actual | expected [397] -0.569972026941717558 | -0.569972026941717558 [397] [398] -0.148987974090024899 | -0.148987974090024899 [398] [399] 2.300158705242296708 | 2.300158705242296708 [399] [400] -0.249094023503620421 - -0.249094023503620643 [400] [401] 0.192910837448867833 | 0.192910837448867833 [401] [402] 1.315195634134789682 | 1.315195634134789682 [402] [403] 1.522086473891400837 | 1.522086473891400837 [403] actual | expected [410] 1.800234723611737309 | 1.800234723611737309 [410] [411] 3.054291150420261225 | 3.054291150420261225 [411] [412] 1.341037024886380769 | 1.341037024886380769 [412] [413] 2.782901449642365410 - 2.782901449642365854 [413] [414] 1.928187567841294081 - 1.928187567841294303 [414] [415] 0.289790880315374200 | 0.289790880315374200 [415] [416] 1.674445498654899334 | 1.674445498654899334 [416] [417] -0.166937910672973644 | -0.166937910672973644 [417] actual | expected [437] -0.477299100924912123 | -0.477299100924912123 [437] [438] -0.048045345851528809 | -0.048045345851528809 [438] [439] 2.389692639704505517 | 2.389692639704505517 [439] [440] -0.159541542926821767 - -0.159541542926821989 [440] [441] 0.295853324076190916 | 0.295853324076190916 [441] [442] 1.402285896257668085 | 1.402285896257668085 [442] [443] 1.618323375282812338 | 1.618323375282812338 [443] actual | expected [450] 1.898281557612162773 | 1.898281557612162773 [450] [451] 3.147041392889431410 | 3.147041392889431410 [451] [452] 1.441192468829099793 | 1.441192468829099793 [452] [453] 2.874005155865151373 - 2.874005155865151817 [453] [454] 2.021050000857668394 | 2.021050000857668394 [454] [455] 0.397872435850433193 | 0.397872435850433193 [455] [456] 1.773514927228139415 | 1.773514927228139415 [456] actual | expected [477] -0.378149308955802232 | -0.378149308955802232 [477] [478] 0.059952113825606501 | 0.059952113825606501 [478] [479] 2.485484057518313250 | 2.485484057518313250 [479] [480] -0.063730282819450229 - -0.063730282819450451 [480] [481] 0.416329542645353212 | 0.416329542645353212 [481] [482] 1.504209852036453965 | 1.504209852036453965 [482] [483] 1.730951876364436925 | 1.730951876364436925 [483] actual | expected [490] 2.013028269004642379 | 2.013028269004642379 [490] [491] 3.255589368075924472 | 3.255589368075924472 [491] [492] 1.558406940236008786 | 1.558406940236008786 [492] [493] 2.980626147672861048 - 2.980626147672861492 [493] [494] 2.129729275503978059 | 2.129729275503978059 [494] [495] 0.524363037880253402 | 0.524363037880253402 [495] [496] 1.889458407139608109 | 1.889458407139608109 [496] actual | expected [517] -0.262111777711759419 | -0.262111777711759419 [517] [518] 0.186344296327281334 | 0.186344296327281334 [518] [519] 2.597591197803023721 | 2.597591197803023721 [519] [520] 0.048400079407673213 - 0.048400079407672991 [520] [521] 0.583409242500149139 | 0.583409242500149139 [521] [522] 1.645560768771584303 | 1.645560768771584303 [522] [523] 1.887148147954838207 | 1.887148147954838207 [523] actual | expected [530] 2.172162132322026373 | 2.172162132322026373 [530] [531] 3.406126655263383540 | 3.406126655263383540 [531] [532] 1.720963160325720498 | 1.720963160325720498 [532] [533] 3.128491041848852738 - 3.128491041848853182 [533] [534] 2.280448652356914963 | 2.280448652356914963 [534] [535] 0.699783648458782714 | 0.699783648458782714 [535] [536] 2.050251981620931474 | 2.050251981620931474 [536] actual | expected [557] -0.101187770281892353 | -0.101187770281892353 [557] [558] 0.361628416024724897 | 0.361628416024724897 [558] [559] 2.753064432046311794 | 2.753064432046311794 [559] [560] 0.203905518472912606 - 0.203905518472912384 [560] [561] 0.721386542461351254 | 0.721386542461351254 [561] [562] 1.762290795549844358 | 1.762290795549844358 [562] [563] 2.016137725005670678 | 2.016137725005670678 [563] actual | expected [570] 2.303577623324282619 | 2.303577623324282619 [570] [571] 3.530442945319332448 | 3.530442945319332448 [571] [572] 1.855204892620964774 | 1.855204892620964774 [572] [573] 3.250600423630020330 - 3.250600423630020774 [573] [574] 2.404915315201510140 - 2.404915315201510584 [574] [575] 0.844649016461035518 | 0.844649016461035518 [575] [576] 2.183038090749236826 | 2.183038090749236826 [576] [577] 0.398582840833641816 | 0.398582840833641816 [577] actual | expected [597] 0.031706052626613079 | 0.031706052626613079 [597] [598] 0.506381067501523674 | 0.506381067501523674 [598] [599] 2.881456912376163526 | 2.881456912376163526 [599] [600] 0.332324594100591786 - 0.332324594100591564 [600] [601] 0.841061273073984039 | 0.841061273073984039 [601] [602] 1.863536685366661061 | 1.863536685366661061 [602] [603] 2.128016946368434859 | 2.128016946368434859 [603] actual | expected [610] 2.417560963253707840 | 2.417560963253707840 [610] [611] 3.638268787159917750 | 3.638268787159917750 [611] [612] 1.971639575383448140 | 1.971639575383448140 [612] [613] 3.356512101667244785 - 3.356512101667245229 [613] [614] 2.512871583010554577 - 2.512871583010555021 [614] [615] 0.970298118854287517 | 0.970298118854287517 [615] [616] 2.298210237497274377 | 2.298210237497274377 [616] [617] 0.526646520867540935 | 0.526646520867540935 [617] actual | expected [637] 0.146971625015189900 | 0.146971625015189900 [637] [638] 0.631932405118808216 | 0.631932405118808216 [638] [639] 2.992818241380886590 | 2.992818241380886590 [639] [640] 0.443708990559917305 - 0.443708990559917082 [640] [641] 1.074958745407395888 | 1.074958745407395888 [641] [642] 2.061416033756025001 | 2.061416033756025001 [642] [643] 2.346678538079746801 | 2.346678538079746801 [643] actual | expected [650] 2.640334935345676204 | 2.640334935345676204 [650] [651] 3.849008278526468096 | 3.849008278526468096 [651] [652] 2.199204557988160946 | 2.199204557988160946 [652] [653] 3.563510468462665504 - 3.563510468462665948 [653] [654] 2.723865984533936135 | 2.723865984533936135 [654] [655] 1.215872161931693896 | 1.215872161931693896 [655] [656] 2.523307665080162909 | 2.523307665080162909 [656] actual | expected [677] 0.372251647712864564 | 0.372251647712864564 [677] [678] 0.877315372487374789 | 0.877315372487374789 [678] [679] 3.210467641856282750 | 3.210467641856282750 [679] [680] 0.661403475066814406 - 0.661403475066814184 [680] [ FAIL 1 | WARN 0 | SKIP 11 | PASS 369 ] Error: ! Test failures. Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [29s/33s] OK * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/data/localhost/ripley/R/packages/tests-OpenBLAS/spCF.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 4:44.39, 156.18 + 13.08