* using log directory ‘/data/gannet/ripley/R/packages/tests-OpenBLAS/robsurvey.Rcheck’
* using R Under development (unstable) (2026-01-28 r89344)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
    GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
* running under: Fedora Linux 42 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘robsurvey/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘robsurvey’ version ‘0.7-1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘robsurvey’ can be installed ... [23s/77s] OK
* used C compiler: ‘gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [3s/13s] OK
* checking whether the package can be loaded with stated dependencies ... [4s/15s] OK
* checking whether the package can be unloaded cleanly ... [4s/12s] OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... [4s/16s] OK
* checking loading without being on the library search path ... [4s/12s] OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [29s/113s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [6s/19s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘basic.R’ [4s/20s]
  Running ‘check_functions.R’
  Running ‘domain.R’ [4s/19s]
  Running ‘greg.R’ [4s/15s]
  Running ‘huber2.R’ [4s/13s]
  Running ‘ratio.R’ [4s/13s]
  Running ‘reg.R’ [4s/10s]
 [24s/93s] ERROR
Running the tests in ‘tests/reg.R’ failed.
Complete output:
  > suppressPackageStartupMessages(library("survey"))
  > library("robsurvey", quietly = TRUE)
  > attach(workplace)
  > 
  > # design object
  > dn <- svydesign(ids = ~ID, strata = ~strat, fpc = ~fpc, weights = ~weight,
  +     data = workplace)
  > 
  > source("check_functions.R")
  > 
  > #===============================================================================
  > # 1 Test against MASS::rlm
  > #===============================================================================
  > if (requireNamespace("MASS", quietly = TRUE)) {
  +     library(MASS)
  +     # make a copy of MASS::rlm
  +     rlm_mod <- MASS:::rlm.default
  +     # replace wmad-function with our weighted mad
  +     body(rlm_mod)[[4]] <- substitute(wmad <- function(x, w) weighted_mad(x, w))
  + 
  +     #---------------------------------------------------------------------------
  +     # Huber regression M-estimator
  +     est <- svyreg_huberM(payroll ~ employment, dn, k = 1.345, tol = 1e-9)
  +     ref <- rlm_mod(x = est$model$x, y = est$model$y, weights = est$model$w,
  +         k = 1.345, scale.est = "MAD", method = "M", wt.method = "case",
  +         acc = 1e-9, maxit = 50, test.vec = "coef")
  +     all_equal(coef(est), coef(ref), tolerance = 1e-7,
  +         label = "Huber regression regression: coefficients")
  +     # model-based covariance matrix
  +     all_equal(vcov(est, "model"), vcov(ref), tolerance = 1e-7,
  +         label = "Huber regression M-est: model-based cov")
  +     # design-based covariance matrix (test against fixed values)
  +     ref <- matrix(c(61704317.084028, -3367311.1407500, -3367311.140750,
  +         870905.6027803), ncol = 2)
  +     colnames(ref) <- rownames(ref) <- c("(Intercept)", "employment")
  +     all_equal(vcov(est), ref,
  +         label = "Huber regression M-est: design-based cov")
  + 
  +     #---------------------------------------------------------------------------
  +     # Tukey regression M-estimator
  +     est <- svyreg_tukeyM(payroll ~ employment, dn, k = 4.6, tol = 1e-9)
  +     ref <- rlm_mod(x = est$model$x, y = est$model$y, weights = est$model$w,
  +         c = 4.6, psi = psi.bisquare,  scale.est = "MAD", method = "M",
  +         wt.method = "case", acc = 1e-9, maxit = 50, test.vec = "coef")
  +     all_equal(coef(est), coef(ref), tolerance = 1e-7,
  +         label = "Tukey regression regression: coefficients")
  +     # model-based covariance matrix
  +     all_equal(vcov(est, "model"), vcov(ref), tolerance = 1e-7,
  +         label = "Tukey regression M-est: model-based cov")
  +     # design-based covariance matrix (test against fixed values)
  +     ref <- matrix(c(43513457.824988, -1421272.808406, -1421272.808406,
  +         589121.583227), ncol = 2)
  +     colnames(ref) <- rownames(ref) <- c("(Intercept)", "employment")
  +     all_equal(vcov(est), ref,
  +         label = "Tukey regression M-est: design-based cov")
  + }
  Error: Huber regression M-est: model-based cov: Mean relative difference: 1
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [48s/194s] OK
* checking PDF version of manual ... [13s/40s] OK
* checking HTML version of manual ... [14s/57s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/gannet/ripley/R/packages/tests-OpenBLAS/robsurvey.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 15:32.11, 224.35 + 25.03