* using log directory ‘/data/gannet/ripley/R/packages/tests-OpenBLAS/ridigbio.Rcheck’
* using R Under development (unstable) (2025-09-24 r88872)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
    GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
* running under: Fedora Linux 42 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘ridigbio/DESCRIPTION’ ... OK
* this is package ‘ridigbio’ version ‘0.4.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ridigbio’ can be installed ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [73s/91s] ERROR
Error(s) in re-building vignettes:
--- re-building ‘BadCoordinateID.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘BadCoordinateID.Rmd’

--- re-building ‘BasicUsage.Rmd’ using rmarkdown

Quitting from BasicUsage.Rmd:124-126 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! HTTP failure: 503
Error message from API server: {"error":"Internal Server Error"}
---
Backtrace:
    ▆
 1. └─ridigbio::idig_search_media(rq = list(scientificname = "Galax urceolata"))
 2.   └─ridigbio::idig_search(...)
 3.     └─ridigbio:::idig_POST(paste0("search/", type), body = query, ...)
 4.       └─ridigbio:::idig_check(req)
 5.         └─base::tryCatch(...)
 6.           └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 7.             └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 8.               └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'BasicUsage.Rmd' failed with diagnostics:
HTTP failure: 503
Error message from API server: {"error":"Internal Server Error"}
--- failed re-building ‘BasicUsage.Rmd’

--- re-building ‘Fields.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘Fields.Rmd’

--- re-building ‘FindTissue.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘FindTissue.Rmd’

--- re-building ‘IDDataFlags.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘IDDataFlags.Rmd’

--- re-building ‘MediaAPIDemo.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘MediaAPIDemo.Rmd’

--- re-building ‘ModifiedDataID.Rmd’ using rmarkdown

Quitting from ModifiedDataID.Rmd:70-109 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! HTTP failure: 503
Error message from API server: {"error":"Internal Server Error"}
---
Backtrace:
     ▆
  1. ├─... %>% ...
  2. ├─dplyr::select(...)
  3. ├─dplyr::rename(...)
  4. └─ridigbio::idig_search_records(...)
  5.   └─ridigbio::idig_search(...)
  6.     └─ridigbio:::idig_POST(paste0("search/", type), body = query, ...)
  7.       └─ridigbio:::idig_check(req)
  8.         └─base::tryCatch(...)
  9.           └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 10.             └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 11.               └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ModifiedDataID.Rmd' failed with diagnostics:
HTTP failure: 503
Error message from API server: {"error":"Internal Server Error"}
--- failed re-building ‘ModifiedDataID.Rmd’

--- re-building ‘RecordAPIDemo.Rmd’ using rmarkdown

Quitting from RecordAPIDemo.Rmd:68-93 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! HTTP failure: 503
Error message from API server: {"error":"Internal Server Error"}
---
Backtrace:
    ▆
 1. └─ridigbio::idig_search_records(...)
 2.   └─ridigbio::idig_search(...)
 3.     └─ridigbio:::idig_POST(paste0("search/", type), body = query, ...)
 4.       └─ridigbio:::idig_check(req)
 5.         └─base::tryCatch(...)
 6.           └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 7.             └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 8.               └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'RecordAPIDemo.Rmd' failed with diagnostics:
HTTP failure: 503
Error message from API server: {"error":"Internal Server Error"}
--- failed re-building ‘RecordAPIDemo.Rmd’

--- re-building ‘ridigbio.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘ridigbio.Rmd’

SUMMARY: processing the following files failed:
  ‘BasicUsage.Rmd’ ‘ModifiedDataID.Rmd’ ‘RecordAPIDemo.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/gannet/ripley/R/packages/tests-OpenBLAS/ridigbio.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 1:59.42, 90.38 + 11.18