* using log directory ‘/data/gannet/ripley/R/packages/tests-OpenBLAS/resourcecode.Rcheck’ * using R Under development (unstable) (2025-12-24 r89227) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2) GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2) * running under: Fedora Linux 42 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘resourcecode/DESCRIPTION’ ... OK * this is package ‘resourcecode’ version ‘0.5.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘resourcecode’ can be installed ... [48s/60s] OK * used C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’ * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [18s/24s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [9s/11s] ERROR Running examples in ‘resourcecode-Ex.R’ failed The error most likely occurred in: > ### Name: get_1d_spectrum > ### Title: Download the 1D spectrum data from IFREMER ftp > ### Aliases: get_1d_spectrum > > ### ** Examples > > ## Don't show: > if (curl::has_internet()) withAutoprint({ # examplesIf + ## End(Don't show) + spec1D <- get_1d_spectrum("SEMREVO", start = "1994-01-01", end = "1994-02-28") + r <- as.POSIXct(round(range(spec1D$forcings$time), "month")) + image(spec1D$forcings$time, spec1D$freq, t(spec1D$ef), + xaxt = "n", xlab = "Time", + ylab = "Frequency (Hz)" + ) + axis.POSIXct(1, spec1D$forcings$time, + at = seq(r[1], r[2], by = "week"), + format = "%Y-%m-%d", las = 2 + ) + ## Don't show: + }) # examplesIf > spec1D <- get_1d_spectrum("SEMREVO", start = "1994-01-01", end = "1994-02-28") Could not download spectral data. The remote server may be unavailable or the URL may have changed. Error in ncdf4::nc_open(file) : Passed a filename that is NOT a string of characters! Calls: withAutoprint ... get_1d_spectrum -> get_1d_spectrum_raw -> Execution halted * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [68s/57s] [69s/58s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [42s/56s] ERROR Error(s) in re-building vignettes: --- re-building ‘resourcecode.Rmd’ using rmarkdown Quitting from resourcecode.Rmd:141-144 [unnamed-chunk-10] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `ncdf4::nc_open()`: ! Passed a filename that is NOT a string of characters! --- Backtrace: ▆ 1. └─resourcecode::get_1d_spectrum(...) 2. └─resourcecode:::get_1d_spectrum_raw(point, years[1], months[1]) 3. └─ncdf4::nc_open(file) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'resourcecode.Rmd' failed with diagnostics: Passed a filename that is NOT a string of characters! --- failed re-building ‘resourcecode.Rmd’ SUMMARY: processing the following file failed: ‘resourcecode.Rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [9s/13s] OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 2 ERRORs See ‘/data/gannet/ripley/R/packages/tests-OpenBLAS/resourcecode.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 5:17.34, 243.27 + 21.53