* using log directory ‘/data/gannet/ripley/R/packages/tests-OpenBLAS/rcatfish.Rcheck’
* using R Under development (unstable) (2026-02-03 r89374)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
    GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
* running under: Fedora Linux 42 (Workstation Edition)
* using session charset: UTF-8
* current time: 2026-02-03 20:48:46Z
* using option ‘--no-stop-on-test-error’
* checking for file ‘rcatfish/DESCRIPTION’ ... OK
* this is package ‘rcatfish’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘rcatfish’ can be installed ... [10s/33s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [17s/50s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [8s/37s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [12s/45s]
 [13s/46s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > test_check("rcatfish")
  Loading required package: rcatfish
  Welcome to rcatfish: Access to the California Academy of Sciences Eschmeyer's Catalog of Fishes
  Catalog of Fishes version of 2 Feb 2026 (Continuously updated since the early 1980s, around the turn of the month.)
  If you use this package please cite both:
  
  This R package: Borstein, S.R., Dominy, B.E. & O'Meara, B.C.(2026) rcatifsh: An R interface to the California Academy of Sciences Eschmeyer's Catalog of Fishes. Available at:https://github.com/sborstein/rcatfish.
  
  Catalog of Fishes: Fricke, R., Eschmeyer, W.N. & van der Laan, R. 2026. Catalog of Fishes: Genera, Species, References. Available at: https://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatmain.asp. Electronic version accessed 03 02 2026.
  Saving _problems/test_rcatfish_updates-9.R
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 17 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_rcatfish_updates.R:9:7'): Test that rcatfish_updates returns proper definitions ──
  Expected `names(updates.hit)` to be identical to `c(...)`.
  Differences:
  Lengths differ: 5 is not 6
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 17 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [14s/34s] OK
* checking PDF version of manual ... [7s/23s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/gannet/ripley/R/packages/tests-OpenBLAS/rcatfish.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 6:25.02, 105.30 + 13.71