* using log directory ‘/data/gannet/ripley/R/packages/tests-OpenBLAS/profdpm.Rcheck’
* using R Under development (unstable) (2020-02-04 r77771)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘profdpm/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘profdpm’ version ‘3.3’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘profdpm’ can be installed ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
profBinary: no visible global function definition for ‘model.frame’
profBinary: no visible global function definition for ‘model.matrix’
profLinear: no visible global function definition for ‘model.frame’
profLinear: no visible global function definition for ‘model.matrix’
profLinear: no visible global function definition for ‘model.response’
profLinear: no visible global function definition for ‘model.extract’
summary.profBinary: no visible global function definition for ‘terms’
summary.profBinary: no visible global function definition for ‘qbeta’
summary.profLinear: no visible global function definition for ‘terms’
Undefined global functions or variables:
  model.extract model.frame model.matrix model.response qbeta terms
Consider adding
  importFrom("stats", "model.extract", "model.frame", "model.matrix",
             "model.response", "qbeta", "terms")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... NOTE
File ‘profdpm/libs/profdpm.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ...Warning: elapsed-time limit of 30 minutes reached for sub-process
 ERROR
Running examples in ‘profdpm-Ex.R’ failed
The error most likely occurred in:

> ### Name: profLinear
> ### Title: Linear Product Partition Models
> ### Aliases: profLinear
> 
> ### ** Examples
> 
> library(profdpm)
> set.seed(42)
> 
> # set up some data
> # linear model 0
> x0  <- rnorm(50, 0, 3)
> y0  <- x0 + rnorm(50, 0, 1) 
> 
> # linear model 1
> x1  <- rnorm(50, 0, 3)
> y1  <- 10 - x1 + rnorm(50, 0, 1)
> 
> # add a column of ones to the covariate matrix (intercept)
> dat <- data.frame(x=c(x0, x1), y=c(y0,y1))
> 
> # indicate grouping within each linear model
> grp <- c(rep(seq(0,4),10), rep(seq(5,9),10))
> 
> # fit the DPMLM
> fit <- profLinear(y ~ x, data=dat, group=grp)

Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ...sh: line 1: 30710 CPU time limit exceeded (core dumped) '/data/gannet/ripley/R/OpenBLAS/bin/R' --vanilla --no-echo > '/data/gannet/ripley/R/packages/tests-OpenBLAS/profdpm.Rcheck/build_vignettes.log' 2>&1 < '/tmp/RtmpXmjGPd/file7b06296855dc'
 [30m/37m] WARNING
Error(s) in re-building vignettes:
--- re-building ‘profdpm.Rnw’ using Sweave

* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR, 1 WARNING, 2 NOTEs
See
  ‘/data/gannet/ripley/R/packages/tests-OpenBLAS/profdpm.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 1:08:09, 3432.29 + 9.49