* using log directory ‘/data/localhost/ripley/R/packages/tests-OpenBLAS/netrics.Rcheck’
* using R Under development (unstable) (2026-10-05 r90641)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
    GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
* running under: Fedora Linux 44 (Server Edition)
* using session charset: UTF-8
* current time: 2026-10-06 03:55:35 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘netrics/DESCRIPTION’ ... OK
* this is package ‘netrics’ version ‘1.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘netrics’ can be installed ... [11s/24s] OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [21s/43s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [26s/59s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [214s/199s]
 [215s/199s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(netrics)
  Loading required package: manynet
  > 
  > test_check("netrics")
  Starting 2 test processes.
  Saving _problems/test-measure_cognitive_contract-10.R
  > test-measure_fit.R: i Calculating coreness using `coreness_correlation()`.
  > test-measure_fit.R: i Calculating coreness using `coreness_rich()`.
  > test-measure_registry_contract.R: Measure contract gaps (6):
  > test-measure_registry_contract.R:   tie_by_eigenvector: `normalized` has no effect on the result
  > test-measure_registry_contract.R:   mode_by_indegree: `normalized` has no effect on the result
  > test-measure_registry_contract.R:   mode_by_outdegree: `normalized` has no effect on the result
  > test-measure_registry_contract.R:   mode_by_closeness: `normalized` has no effect on the result
  > test-measure_registry_contract.R:   node_by_stress: ignores tie weights
  > test-measure_registry_contract.R:   node_by_information: ignores tie weights
  [ FAIL 1 | WARN 0 | SKIP 70 | PASS 4164 ]
  
  ══ Skipped tests (70) ══════════════════════════════════════════════════════════
  • On CRAN (5): 'test-tutorials_netrics.R:5:3', 'test-mark_nodes.R:106:3',
    'test-mark_ties.R:64:3', 'test-mark_ties.R:73:3', 'test-motif_nodes.R:119:3'
  • `ison_hightech` is a CSS only since manynet 2.4.0 (30):
    'test-measure_cognitive_contract.R:9:7',
    'test-measure_cognitive_contract.R:9:7',
    'test-measure_cognitive_contract.R:9:7',
    'test-measure_cognitive_contract.R:9:7',
    'test-measure_cognitive_contract.R:9:7',
    'test-measure_cognitive_contract.R:9:7',
    'test-measure_cognitive_contract.R:9:7',
    'test-measure_cognitive_contract.R:9:7',
    'test-measure_cognitive_contract.R:9:7',
    'test-measure_cognitive_contract.R:9:7',
    'test-measure_cognitive_contract.R:9:7',
    'test-measure_cognitive_contract.R:9:7',
    'test-measure_cognitive_contract.R:9:7',
    'test-measure_cognitive_contract.R:9:7',
    'test-measure_cognitive_contract.R:9:7',
    'test-measure_cognitive_contract.R:9:7',
    'test-measure_cognitive_contract.R:9:7',
    'test-measure_cognitive_contract.R:9:7',
    'test-measure_cognitive_contract.R:9:7',
    'test-measure_cognitive_contract.R:9:7',
    'test-measure_cognitive_contract.R:9:7',
    'test-measure_cognitive_contract.R:9:7',
    'test-measure_cognitive_contract.R:9:7',
    'test-measure_cognitive_contract.R:9:7',
    'test-measure_cognitive_contract.R:9:7',
    'test-measure_cognitive_contract.R:9:7', 'test-shapes.R:123:3',
    'test-shapes.R:156:3', 'test-shapes.R:186:3', 'test-shapes.R:192:3'
  • fn == "node_is_core" && manynet::is_directed(data_objs[[ob]]) is TRUE (1):
    'test-mark_nodes.R:11:9'
  • grepl("core|spatial", fn) is TRUE (12): 'test-measure_net.R:5:7',
    'test-measure_net.R:5:7', 'test-measure_net.R:5:7', 'test-measure_net.R:5:7',
    'test-measure_net.R:5:7', 'test-measure_net.R:5:7', 'test-measure_net.R:5:7',
    'test-measure_net.R:5:7', 'test-measure_net.R:5:7', 'test-measure_net.R:5:7',
    'test-measure_net.R:5:7', 'test-measure_net.R:5:7'
  • grepl("exposure|mixed|hazard", fn) is TRUE (6): 'test-motif_net.R:5:7',
    'test-motif_net.R:5:7', 'test-motif_net.R:5:7', 'test-motif_net.R:5:7',
    'test-motif_net.R:5:7', 'test-motif_net.R:5:7'
  • grepl("fluid", fn) &&
    !igraph::is_connected(manynet::as_igraph(manynet::to_positive(data_objs[[ob]])))
    is TRUE (2): 'test-member_nodes.R:12:7', 'test-member_nodes.R:12:7'
  • grepl("homophily", fn) && is_twomode(data_objs[[ob]]) is TRUE (1):
    'test-motif_net.R:8:7'
  • grepl("multideg", fn) is TRUE (6): 'test-measure_nodes.R:12:7',
    'test-measure_nodes.R:12:7', 'test-measure_nodes.R:12:7',
    'test-measure_nodes.R:12:7', 'test-measure_nodes.R:12:7',
    'test-measure_nodes.R:12:7'
  • grepl("net_by_factions", fn) && ob == "twomode" is TRUE (1):
    'test-measure_net.R:6:7'
  • grepl("spinglass", fn) &&
    !igraph::is_connected(manynet::as_igraph(data_objs[[ob]])) is TRUE (1):
    'test-member_nodes.R:8:7'
  • grepl("tie_is_imbalanced", fn) && ob == "twomode" is TRUE (1):
    'test-mark_ties.R:5:7'
  • grepl("triad", fn) && is_twomode(data_objs[[ob]]) is TRUE (1):
    'test-motif_net.R:6:7'
  • grepl("triad|dyad", fn) && is_twomode(data_objs[[ob]]) is TRUE (2):
    'test-motif_nodes.R:5:7', 'test-motif_nodes.R:5:7'
  • manynet::is_cognitive(css) is not TRUE (1): 'test-measure_fit.R:152:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-measure_cognitive_contract.R:9:7'): centrality_node measures read the sparse CSS as its aggregated structure ──
  Expected node_by_hub on a CSS to equal its value on the aggregated network.
  Differences:
    `actual`: 0.999963 0.999988 0.999987 0.999988 1.000000 0.999989
  `expected`: 1.000000 0.407567 0.000000 0.000000 0.582706 0.000000
  
  Backtrace:
      ▆
   1. └─netrics:::check_cognitive_contract(...) at test-measure_cognitive_contract.R:9:7
   2.   └─testthat::expect_equal(...) at ./helper-contract.R:436:5
  
  [ FAIL 1 | WARN 0 | SKIP 70 | PASS 4164 ]
  Error:
  ! Test failures.
  Execution halted
* checking PDF version of manual ... [13s/14s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/localhost/ripley/R/packages/tests-OpenBLAS/netrics.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 6:56.08, 313.67 + 10.74