* using log directory ‘/data/gannet/ripley/R/packages/tests-OpenBLAS/mLLMCelltype.Rcheck’
* using R Under development (unstable) (2026-06-06 r90113)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)
    GNU Fortran (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)
* running under: Fedora Linux 42 (Workstation Edition)
* using session charset: UTF-8
* current time: 2026-06-08 09:47:01 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘mLLMCelltype/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘mLLMCelltype’ version ‘2.0.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mLLMCelltype’ can be installed ... [28s/70s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [19s/51s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [8s/17s]
 [9s/18s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(mLLMCelltype)
  
  +-------------------------------------------------------------------------+
  |                             mLLMCelltype                               |
  |                    Cell Type Annotation with LLMs                      |
  +-------------------------------------------------------------------------+
  
  mLLMCelltype v2.0.5 loaded successfully!
  For more information, please visit:
  - Documentation: https://cafferychen777.github.io/mLLMCelltype/
  - GitHub: https://github.com/cafferychen777/mLLMCelltype
  - Paper: https://doi.org/10.1101/2025.04.10.647852
  
  To cite this package in publications, use:
    citation("mLLMCelltype")
  > 
  > test_check("mLLMCelltype")
  Saving _problems/test-cache-performance-190.R
  Saving _problems/test-cache-performance-196.R
  [ FAIL 2 | WARN 0 | SKIP 7 | PASS 187 ]
  
  ══ Skipped tests (7) ═══════════════════════════════════════════════════════════
  • Set NOT_CRAN=true to run this test (6): 'test-cache-real-api.R:4:3',
    'test-cache-real-api.R:45:3', 'test-cache-real-api.R:78:3',
    'test-cache-simple-api.R:4:3', 'test-cache-simple-api.R:32:3',
    'test-cache-simple-api.R:61:3'
  • empty test (1): 'test-cache-cran-compliance.R:99:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-cache-performance.R:190:5'): Cache validation performance with various data sizes ──
  Expected `validation_time < 0.1` to be TRUE.
  Differences:
  `actual`:   FALSE
  `expected`: TRUE 
  
  ── Failure ('test-cache-performance.R:196:3'): Cache validation performance with various data sizes ──
  Expected `all(unlist(validation_times) < 0.1)` to be TRUE.
  Differences:
  `actual`:   FALSE
  `expected`: TRUE 
  
  
  [ FAIL 2 | WARN 0 | SKIP 7 | PASS 187 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [48s/124s] OK
* checking PDF version of manual ... [11s/24s] OK
* checking HTML version of manual ... [9s/24s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/gannet/ripley/R/packages/tests-OpenBLAS/mLLMCelltype.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 7:44.87, 160.29 + 18.66