* using log directory ‘/data/gannet/ripley/R/packages/tests-OpenBLAS/htrSPRanalysis.Rcheck’
* using R Under development (unstable) (2025-12-18 r89199)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
    GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
* running under: Fedora Linux 42 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘htrSPRanalysis/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘htrSPRanalysis’ version ‘0.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘htrSPRanalysis’ can be installed ... [8s/10s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [14s/18s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [17s/23s] ERROR
Error(s) in re-building vignettes:
--- re-building ‘htrSPRanalysis-vignette.Rmd’ using knitr
trying URL 'https://gitlab.oit.duke.edu/janice/htrspranalysis/-/raw/master/inst/extdata/titration_data.xlsx?ref_type=heads'
downloaded 70 KB


Quitting from htrSPRanalysis-vignette.Rmd:92-121 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `file()`:
! invalid 'description' argument
---
Backtrace:
    ▆
 1. └─htrSPRanalysis::process_input(...)
 2.   ├─openxlsx::read.xlsx(...)
 3.   └─openxlsx:::read.xlsx.default(...)
 4.     ├─base::paste(readUTF8(workbookRelsXML), collapse = "")
 5.     └─openxlsx:::readUTF8(workbookRelsXML)
 6.       └─base::readLines(x, warn = FALSE, encoding = "UTF-8")
 7.         └─base::file(con, "r")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'htrSPRanalysis-vignette.Rmd' failed with diagnostics:
invalid 'description' argument
--- failed re-building ‘htrSPRanalysis-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘htrSPRanalysis-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/gannet/ripley/R/packages/tests-OpenBLAS/htrSPRanalysis.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 1:41.98, 66.61 + 9.24