* using log directory ‘/data/localhost/ripley/R/packages/tests-OpenBLAS/gap.Rcheck’
* using R Under development (unstable) (2026-10-15 r90676)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
* running under: Fedora Linux 44 (Server Edition)
* using session charset: UTF-8
* current time: 2026-10-16 16:42:29 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘gap/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘gap’ version ‘1.15.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘gap’ can be installed ... [18s/20s] OK
* used C compiler: ‘gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)’
* used Fortran compiler: ‘GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)’
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
Base package in Suggests/Enhances imported in NAMESPACE:
‘grDevices’
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [21s/23s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking usage of KIND in Fortran files ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [4s/11s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [9s/36s] ERROR
Error(s) in re-building vignettes:
--- re-building ‘gap.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘gap.Rmd’
--- re-building ‘shinygap.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
Could not fetch http://www.zotero.org/styles/nature
HttpExceptionRequest Request {
host = "www.zotero.org"
port = 443
secure = True
requestHeaders = [("User-Agent","pandoc/3.12.1")]
path = "/styles/nature"
queryString = ""
method = "GET"
proxy = Nothing
rawBody = False
redirectCount = 10
responseTimeout = ResponseTimeoutDefault
requestVersion = HTTP/1.1
proxySecureMode = ProxySecureWithConnect
}
(StatusCodeException (Response {responseStatus = Status {statusCode = 504, statusMessage = "Gateway Time-out"}, responseVersion = HTTP/1.1, responseHeaders = [("Content-Type","text/html"),("Content-Length","132"),("Connection","keep-alive"),("Server","awselb/2.0"),("Date","Fri, 16 Oct 2026 16:44:50 GMT"),("X-Cache","Error from cloudfront"),("Via","1.1 760bc344e49744534bb1d317b1f3f81e.cloudfront.net (CloudFront)"),("X-Amz-Cf-Pop","LHR3-P4"),("Alt-Svc","h3=\":443\"; ma=86400"),("X-Amz-Cf-Id","_j_qvcRD28nnTgSl4vIUFHWNkJl8vXALzvG5FKEaJMRJzJU74MNZlw==")], responseBody = (), responseCookieJar = CJ {expose = []}, responseClose' = ResponseClose, responseOriginalRequest = Request {
host = "www.zotero.org"
port = 443
secure = True
requestHeaders = [("User-Agent","pandoc/3.12.1")]
path = "/styles/nature"
queryString = ""
method = "GET"
proxy = Nothing
rawBody = False
redirectCount = 10
responseTimeout = ResponseTimeoutDefault
requestVersion = HTTP/1.1
proxySecureMode = ProxySecureWithConnect
}
, responseEarlyHints = []}) "\r\n504 Gateway Time-out\r\n\r\n504 Gateway Time-out
\r\n\r\n\r\n")
Error: processing vignette 'shinygap.Rmd' failed with diagnostics:
pandoc document conversion failed with error 61
--- failed re-building ‘shinygap.Rmd’
SUMMARY: processing the following file failed:
‘shinygap.Rmd’
Error: Vignette re-building failed.
Execution halted
* checking PDF version of manual ... [8s/19s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 NOTE
See
‘/data/localhost/ripley/R/packages/tests-OpenBLAS/gap.Rcheck/00check.log’
for details.
Command exited with non-zero status 1
Time 2:50.75, 93.65 + 9.19