* using log directory ‘/data/gannet/ripley/R/packages/tests-OpenBLAS/classyfireR.Rcheck’
* using R Under development (unstable) (2022-05-20 r82384)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘classyfireR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘classyfireR’ version ‘0.3.8’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘classyfireR’ can be installed ... [11s/24s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [12s/21s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [4s/399s]
 [4s/400s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > Sys.setenv("R_TESTS" = "")
  > 
  > library(testthat)
  > library(classyfireR)
  Loading required package: magrittr
  
  Attaching package: 'magrittr'
  
  The following objects are masked from 'package:testthat':
  
      equals, is_less_than, not
  
  > 
  > test_check('classyfireR')
  [ FAIL 3 | WARN 0 | SKIP 0 | PASS 1 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error (test-classification.R:6:3): inchikey in/out db ───────────────────────
  Error in `eval_bare(expr, quo_get_env(quo))`: trying to get slot "meta" from an object of a basic class ("NULL") with no slots
  Backtrace:
      ▆
   1. └─testthat::expect_equal(no_db@meta[["inchikey"]], "InChIKey=MDHYEMXUFSJLGV-UHFFFAOYSA-N") at test-classification.R:6:2
   2.   └─testthat::quasi_label(enquo(object), label, arg = "object")
   3.     └─rlang::eval_bare(expr, quo_get_env(quo))
  ── Failure (test-classification.R:27:3): entity-classification ─────────────────
  isS4(cl1) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  ── Error (test-classification.R:28:3): entity-classification ───────────────────
  Error in `(function (classes, fdef, mtable) 
  {
      methods <- .findInheritedMethods(classes, fdef, mtable)
      if (length(methods) == 1L) 
          return(methods[[1L]])
      else if (length(methods) == 0L) {
          cnames <- paste0("\"", vapply(classes, as.character, 
              ""), "\"", collapse = ", ")
          stop(gettextf("unable to find an inherited method for function %s for signature %s", 
              sQuote(fdef@generic), sQuote(cnames)), domain = NA)
      }
      else stop("Internal error in finding inherited methods; didn't return a unique method", 
          domain = NA)
  })(list("NULL"), new("nonstandardGenericFunction", .Data = function (object) 
  {
      standardGeneric("meta")
  }, generic = structure("meta", package = "classyfireR"), package = "classyfireR", 
      group = list(), valueClass = character(0), signature = "object", 
      default = NULL, skeleton = (function (object) 
      stop(gettextf("invalid call in method dispatch to '%s' (no default method)", 
          "meta"), domain = NA))(object)), <environment>)`: unable to find an inherited method for function 'meta' for signature '"NULL"'
  Backtrace:
      ▆
   1. ├─testthat::expect_true(is.list(meta(cl1))) at test-classification.R:28:2
   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. └─classyfireR::meta(cl1)
   5.   └─methods `<fn>`(`<list>`, `<nnstndGF>`, `<env>`)
  
  [ FAIL 3 | WARN 0 | SKIP 0 | PASS 1 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [4s/513s] ERROR
Error(s) in re-building vignettes:
--- re-building ‘Getting-Started.Rmd’ using rmarkdown
Quitting from lines 107-116 (Getting-Started.Rmd) 
Error: processing vignette 'Getting-Started.Rmd' failed with diagnostics:
unable to find an inherited method for function 'classification' for signature '"NULL"'
--- failed re-building ‘Getting-Started.Rmd’

SUMMARY: processing the following file failed:
  ‘Getting-Started.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 2 ERRORs
See
  ‘/data/gannet/ripley/R/packages/tests-OpenBLAS/classyfireR.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 17:50.42, 86.38 + 10.68