* using log directory ‘/data/gannet/ripley/R/packages/tests-OpenBLAS/bw.Rcheck’
* using R Under development (unstable) (2018-07-16 r74967)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘bw/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘bw’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘bw’ can be installed ... [74s/128s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘utils’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [14s/37s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [10s/23s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’/data/gannet/ripley/R/OpenBLAS/bin/BATCH: line 60: 20986 Segmentation fault      (core dumped) ${R_HOME}/bin/R -f ${in} ${opts} ${R_BATCH_OPTIONS} > ${out} 2>&1
 [4s/12s]
 [5s/13s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(bw)
  Please cite the package as:
  Dalia Camacho-Garcia-Formenti and Rodrigo Zepeda-Tello (2018). bw: Dynamic Body Weight Models for Children and Adults. R package version 1.0.0.
  Feel free to contact us with any questions.
  > 
  > test_check("bw")
  
   *** caught segfault ***
  address 0xec68000, cause 'memory not mapped'
  
  Traceback:
   1: adult_weight_wrapper_EI(bw, ht, age, newsex, EIchange, NAchange,     PAL, pcarb_base, pcarb, dt, EI, ceiling(days), checkValues,     TRUE)
   2: adult_weight(bw = c(76, 58, 65), ht = c(1.73, 1.64, 1.65), age = c(36,     21, 56), sex = c("male", "female", "female"), PAL = c(1.5,     1.7, 1.5), EI = matrix(c(rep(2287, 365), rep(2159, 365),     rep(1762, 365)), nrow = 3, byrow = T))
   3: eval(code, test_env)
   4: eval(code, test_env)
   5: withCallingHandlers({    eval(code, test_env)    if (!handled && !is.null(test)) {        skip_empty()    }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,     message = handle_message, error = handle_error)
   6: doTryCatch(return(expr), name, parentenv, handler)
   7: tryCatchOne(expr, names, parentenv, handlers[[1L]])
   8: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
   9: doTryCatch(return(expr), name, parentenv, handler)
  10: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),     names[nh], parentenv, handlers[[nh]])
  11: tryCatchList(expr, classes, parentenv, handlers)
  12: tryCatch(withCallingHandlers({    eval(code, test_env)    if (!handled && !is.null(test)) {        skip_empty()    }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,     message = handle_message, error = handle_error), error = handle_fatal,     skip = function(e) {    })
  13: test_code(desc, code, env = parent.frame())
  14: test_that("Checking adult_bmi messages", {    W <- adult_weight(bw = c(76, 58, 65), ht = c(1.73, 1.64,         1.65), age = c(36, 21, 56), sex = c("male", "female",         "female"), PAL = c(1.5, 1.7, 1.5), EI = matrix(c(rep(2287,         365), rep(2159, 365), rep(1762, 365)), nrow = 3, byrow = T))    expect_message({        adult_bmi(W, days = seq(0, 364, by = 5))    })})
  15: eval(code, test_env)
  16: eval(code, test_env)
  17: withCallingHandlers({    eval(code, test_env)    if (!handled && !is.null(test)) {        skip_empty()    }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,     message = handle_message, error = handle_error)
  18: doTryCatch(return(expr), name, parentenv, handler)
  19: tryCatchOne(expr, names, parentenv, handlers[[1L]])
  20: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
  21: doTryCatch(return(expr), name, parentenv, handler)
  22: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),     names[nh], parentenv, handlers[[nh]])
  23: tryCatchList(expr, classes, parentenv, handlers)
  24: tryCatch(withCallingHandlers({    eval(code, test_env)    if (!handled && !is.null(test)) {        skip_empty()    }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,     message = handle_message, error = handle_error), error = handle_fatal,     skip = function(e) {    })
  25: test_code(NULL, exprs, env)
  26: source_file(path, new.env(parent = env), chdir = TRUE, wrap = wrap)
  27: force(code)
  28: with_reporter(reporter = reporter, start_end_reporter = start_end_reporter,     {        lister$start_file(basename(path))        source_file(path, new.env(parent = env), chdir = TRUE,             wrap = wrap)        end_context()    })
  29: FUN(X[[i]], ...)
  30: lapply(paths, test_file, env = env, reporter = current_reporter,     start_end_reporter = FALSE, load_helpers = FALSE, wrap = wrap)
  31: force(code)
  32: with_reporter(reporter = current_reporter, results <- lapply(paths,     test_file, env = env, reporter = current_reporter, start_end_reporter = FALSE,     load_helpers = FALSE, wrap = wrap))
  33: test_files(paths, reporter = reporter, env = env, stop_on_failure = stop_on_failure,     stop_on_warning = stop_on_warning, wrap = wrap)
  34: test_dir(path = test_path, reporter = reporter, env = env, filter = filter,     ..., stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning,     wrap = wrap)
  35: test_package_dir(package = package, test_path = test_path, filter = filter,     reporter = reporter, ..., stop_on_failure = stop_on_failure,     stop_on_warning = stop_on_warning, wrap = wrap)
  36: test_check("bw")
  An irrecoverable exception occurred. R is aborting now ...
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [125s/319s] OK
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/data/gannet/ripley/R/packages/tests-OpenBLAS/bw.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 11:22.35, 282.71 + 13.03