* using log directory ‘/data/gannet/ripley/R/packages/tests-OpenBLAS/bclust.Rcheck’
* using R Under development (unstable) (2020-01-13 r77662)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘bclust/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘bclust’ version ‘1.5’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘bclust’ can be installed ... [10s/15s] OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [8s/11s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... NOTE
File ‘bclust/libs/bclust.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
* checking examples ... ERROR
Running examples in ‘bclust-Ex.R’ failed
The error most likely occurred in:

> ### Name: profileplot
> ### Title: a plot useful to visualise replicated data
> ### Aliases: profileplot
> 
> ### ** Examples
> 
> data(gaelle)
> #take a subset of gaelle data
> subgaelle<-gaelle[1:11,]
> 
> #use thresholds to define blob colors
> blob<-matrix(0,nrow(subgaelle),ncol(subgaelle))
> blob[abs(subgaelle)<=0.74]<-0 
> blob[abs(subgaelle)>0.74]<-1
> blob[abs(subgaelle)>0.94]<-2
> blob[abs(subgaelle)>1.28]<-3
> profileplot(subgaelle,1:nrow(subgaelle),scale=10,blob.matrix=blob)
> 
> #make a profile plot with colored blobs
> ####### attach a profileplot to a teeth plot
> subgaelle.bclust<-bclust(subgaelle,
+ transformed.par=c(-1.84,-0.99,1.63,0.08,-0.16,-1.68))
2/11
3/11
4/11
5/11
6/11
7/11
8/11
9/11
10/11
11/11
> # divide plot space into two unequal parts
> layout(matrix(c(1,2),1,2,byrow=TRUE), c(9,1),10, respect=TRUE) 
> # associate a color to each subject
> subgaelle.color<-c(rep("blue",3),rep("green",4),rep("magenta",4))
> # find appropriate order to plot subjects
> subgaelle.order<-order.dendrogram(as.dendrogram(subgaelle.bclust))
> #leave some space for labels 
> x.mar<-7
> y.mar<-5
> profileplot(subgaelle,rep.id=1:nrow(subgaelle),scale=10,
+ profile.col=subgaelle.color,plot.order=subgaelle.order,
+ xlab.mar=x.mar,ylab.mar=y.mar)
> par(mar=c(x.mar,0,0,0))
> teethplot(subgaelle.bclust)
Error in xy.coords(x, y) : 'x' and 'y' lengths differ
Calls: teethplot -> points -> points.default -> plot.xy -> xy.coords
Execution halted
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/data/gannet/ripley/R/packages/tests-OpenBLAS/bclust.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 1:20.63, 46.67 + 5.02