* using log directory ‘/data/gannet/ripley/R/packages/tests-OpenBLAS/ISwR.Rcheck’ * using R Under development (unstable) (2024-04-09 r86373) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc-13 (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Fedora Linux 36 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘ISwR/DESCRIPTION’ ... OK * this is package ‘ISwR’ version ‘2.0-8’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ISwR’ can be installed ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) secretin.Rd:17: Lost braces 17 | {\code{a}: 1st sample}; | ^ checkRd: (-1) secretin.Rd:18: Lost braces 18 | {\code{b}: 2nd sample}.} | ^ checkRd: (-1) secretin.Rd:20: Lost braces 20 | {\code{20+}: 20 minutes or longer since injection}; | ^ checkRd: (-1) secretin.Rd:21: Lost braces 21 | {\code{pre}: before injection.}} | ^ checkRd: (-1) secretin.Rd:23: Lost braces 23 | {\code{20}: 20 minutes since injection}; | ^ checkRd: (-1) secretin.Rd:24: Lost braces 24 | {\code{30+}: 30 minutes or longer since injection}; | ^ checkRd: (-1) secretin.Rd:25: Lost braces 25 | {\code{pre}: before injection. }} | ^ * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘allexercises.R’ Comparing ‘allexercises.Rout’ to ‘allexercises.Rout.save’ ...192c192 < In wilcox.test.default(x = DATA[[1L]], y = DATA[[2L]], ...) : --- > In wilcox.test.default(x = c(4.62, 5.29, 5.52, 3.71, 4.02, 5.09, : 224c224 < alternative hypothesis: true mean difference is not equal to 0 --- > alternative hypothesis: true difference in means is not equal to 0 228c228 < mean difference --- > mean of the differences 1035c1035 < id 15 51138 70816 252.47 2.4254 0.05287 . --- > id 15 51137 70816 252.47 2.4254 0.05287 . 1045c1045 < id 15 51138 3409.2 2.4254 0.05287 . --- > id 15 51137 3409.2 2.4254 0.05287 . 1607a1608,1611 > Deviance Residuals: > Min 1Q Median 3Q Max > -1.8492 -0.7536 -0.4838 0.8809 2.5796 > 1633a1638,1641 > Deviance Residuals: > Min 1Q Median 3Q Max > -2.00075 -0.36457 -0.09559 0.57964 1.68281 > 1658a1667,1670 > Deviance Residuals: > Min 1Q Median 3Q Max > -1.9886 -0.4001 -0.2386 0.5503 1.8189 > 1733a1746,1749 > Deviance Residuals: > Min 1Q Median 3Q Max > -1.8298 -0.6412 -0.1189 0.6440 1.7503 > 1806a1823,1826 > Deviance Residuals: > Min 1Q Median 3Q Max > -2.59247 -0.04329 0.00000 0.00063 2.60152 > 1829a1850,1853 > Deviance Residuals: > Min 1Q Median 3Q Max > -2.5641 -0.0247 0.0000 0.0000 2.5668 > 2012a2037,2044 > Deviance Residuals: > 1 2 3 4 5 6 7 8 > -0.49634 1.16817 0.32723 0.40686 -1.09690 -0.22273 0.16765 -0.30402 > 9 10 11 12 13 14 15 16 > -0.09277 -0.12546 0.37096 0.08185 0.34354 -0.90739 -0.23107 -0.28244 > 17 18 19 20 21 22 23 24 > 0.77919 0.15943 -0.15340 0.30384 0.09596 0.13145 -0.41848 -0.08840 > 2073a2106,2109 > > Deviance Residuals: > Min 1Q Median 3Q Max > -1.4288 -0.7090 -0.5282 -0.3361 3.4559 Running ‘allscripts.R’ [7s/11s] Comparing ‘allscripts.Rout’ to ‘allscripts.Rout.save’ ...487c487 < [1] 190 --- > [1] 185 982c982 < alternative hypothesis: true difference in means between group lean and group obese is not equal to 0 --- > alternative hypothesis: true difference in means is not equal to 0 995c995 < alternative hypothesis: true difference in means between group lean and group obese is not equal to 0 --- > alternative hypothesis: true difference in means is not equal to 0 1024c1024 < In wilcox.test.default(x = DATA[[1L]], y = DATA[[2L]], ...) : --- > In wilcox.test.default(x = c(7.53, 7.48, 8.08, 8.09, 10.15, 8.4, : 1049c1049 < alternative hypothesis: true mean difference is not equal to 0 --- > alternative hypothesis: true difference in means is not equal to 0 1053c1053 < mean difference --- > mean of the differences 2749,2751c2749,2751 < gr 1 206698 206698 NaN NaN < factor(gr) 4 17405 4351 NaN NaN < Residuals 0 0 NaN --- > gr 1 206698 206698 > factor(gr) 4 17405 4351 > Residuals 0 0 3004c3004 < alternative hypothesis: true difference in means between group Yes and group No is not equal to 0 --- > alternative hypothesis: true difference in means is not equal to 0 3141a3142,3147 > Deviance Residuals: > 1 2 3 4 5 6 > -0.04344 0.54145 -0.25476 -0.80051 0.19759 -0.46602 > 7 8 > -0.21262 0.56231 > 3164a3171,3176 > Deviance Residuals: > 1 2 3 4 5 6 > -0.04344 0.54145 -0.25476 -0.80051 0.19759 -0.46602 > 7 8 > -0.21262 0.56231 > 3187a3200,3205 > Deviance Residuals: > 1 2 3 4 5 6 > -0.01247 0.47756 -0.24050 -0.82050 0.30794 -0.62742 > 7 8 > -0.14449 0.45770 > 3279a3298,3301 > Deviance Residuals: > <4 4 4.5 5 5.5 6+ > -0.18531 0.00877 -0.32760 0.34087 1.04313 -0.66215 > 3305c3327 < Df Deviance Resid. Df Resid. Dev Pr(>Chi) --- > Df Deviance Resid. Df Resid. Dev 3307,3309c3329 < shoe.score 1 7.5597 4 1.7845 0.005969 ** < --- < Signif. codes: 0 `***' 0.001 `**' 0.01 `*' 0.05 `.' 0.1 ` ' 1 --- > shoe.score 1 7.5597 4 1.7845 3369a3390,3393 > Deviance Residuals: > Min 1Q Median 3Q Max > -2.32759 -0.18998 0.01253 0.12132 2.45922 > 3389a3414,3417 > Deviance Residuals: > Min 1Q Median 3Q Max > -2.56180 -0.12461 0.02475 0.08055 2.86120 > 3487a3516,3519 > Deviance Residuals: > Min 1Q Median 3Q Max > -2.45697 -0.15434 0.00835 0.09505 2.59033 > 3516c3548 < Df Deviance Resid. Df Resid. Dev Pr(>Chi) --- > Df Deviance Resid. Df Resid. Dev 3518,3521c3550,3551 < age 1 518.73 517 200.66 < 2e-16 *** < age.gr 3 8.06 514 192.61 0.04483 * < --- < Signif. codes: 0 `***' 0.001 `**' 0.01 `*' 0.05 `.' 0.1 ` ' 1 --- > age 1 518.73 517 200.66 > age.gr 3 8.06 514 192.61 3534c3564 < Df Deviance Resid. Df Resid. Dev Pr(>Chi) --- > Df Deviance Resid. Df Resid. Dev 3536,3541c3566,3569 < age 1 518.73 517 200.66 < 2.2e-16 *** < I(age^2) 1 0.05 516 200.61 0.819906 < I(age^3) 1 8.82 515 191.80 0.002984 ** < age.gr 3 3.34 512 188.46 0.342745 < --- < Signif. codes: 0 `***' 0.001 `**' 0.01 `*' 0.05 `.' 0.1 ` ' 1 --- > age 1 518.73 517 200.66 > I(age^2) 1 0.05 516 200.61 > I(age^3) 1 8.82 515 191.80 > age.gr 3 3.34 512 188.46 3592c3620 < [1,] 205 57 NA NA NA --- > 205 57 NA NA NA 3733a3762,3765 > Deviance Residuals: > Min 1Q Median 3Q Max > -2.63573 -0.67296 -0.03436 0.37258 1.85267 > 3799a3832,3835 > Deviance Residuals: > Min 1Q Median 3Q Max > -2.64704 -0.62400 0.02301 0.36721 1.84308 > 3947a3984,3987 > Deviance Residuals: > Min 1Q Median 3Q Max > -0.6758 -0.3159 -0.1821 -0.0918 4.1972 > 4009a4050,4053 > Deviance Residuals: > Min 1Q Median 3Q Max > -0.4215 -0.3452 -0.2490 -0.1429 3.9398 > 4076a4121,4124 > > Deviance Residuals: > Min 1Q Median 3Q Max > -0.8113 -0.3172 -0.2168 -0.1196 4.1466 [15s/21s] OK * checking PDF version of manual ... [8s/18s] OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 NOTE See ‘/data/gannet/ripley/R/packages/tests-OpenBLAS/ISwR.Rcheck/00check.log’ for details. Time 1:37.69, 46.34 + 8.05