* using log directory ‘/data/localhost/ripley/R/packages/tests-OpenBLAS/GLMMcosinor.Rcheck’
* using R Under development (unstable) (2026-07-19 r90278)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)
    GNU Fortran (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)
* running under: Fedora Linux 44 (Server Edition)
* using session charset: UTF-8
* current time: 2026-07-19 13:20:15 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘GLMMcosinor/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘GLMMcosinor’ version ‘0.2.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘GLMMcosinor’ can be installed ... [10s/11s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [15s/16s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [41s/42s]
 [41s/42s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(GLMMcosinor)
  > 
  > test_check("GLMMcosinor")
  Saving _problems/test-cglmm-199.R
  Test Details: 
  Parameter being tested:
  Amplitude
  
  Comparison type:
  components
  
  Component indices used for comparison between groups: X
  Reference component: 1
  Comparator component: 2
  
  
  Global test: 
  Statistic: 
  0.05
  
  P-value: 
  0.8146
  
  
  Individual tests:
  Statistic: 
  0.23
  
  P-value: 
  0.8146
  
  Estimate and 95% confidence interval:
  3.66 (-26.92 to 34.24)vit_d  time     X     Y 
      0     0     0   200 
  [ FAIL 1 | WARN 2 | SKIP 17 | PASS 86 ]
  
  ══ Skipped tests (17) ══════════════════════════════════════════════════════════
  • On CRAN (17): 'test-amp_acro.R:8:1', 'test-amp_acro.R:157:1',
    'test-autoplot.R:7:1', 'test-autoplot.R:30:1', 'test-autoplot.R:47:1',
    'test-autoplot.R:62:1', 'test-autoplot.R:78:1', 'test-autoplot.R:151:1',
    'test-autoplot.R:169:1', 'test-autoplot.R:310:1', 'test-cglmm.R:16:1',
    'test-cglmm.R:159:1', 'test-cglmm.R:291:1', 'test-polar_plot.R:1:1',
    'test-polar_plot.R:184:1', 'test-summary.cosinor.R:1:1',
    'test-test_cosinor.R:179:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-cglmm.R:192:3'): model output is class cglmm ─────────────────
  Expected `cglmm(...)` to throw a warning.
  
  [ FAIL 1 | WARN 2 | SKIP 17 | PASS 86 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [56s/59s] OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/localhost/ripley/R/packages/tests-OpenBLAS/GLMMcosinor.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 3:17.23, 173.46 + 14.17