* using log directory ‘/data/localhost/ripley/R/packages/tests-MKL/wsMed.Rcheck’ * using R Under development (unstable) (2026-10-28 r90767) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2) GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2) * running under: Fedora Linux 44 (Server Edition) * using session charset: UTF-8 * current time: 2026-10-28 10:30:55 UTC * using option ‘--no-stop-on-test-error’ * checking for file ‘wsMed/DESCRIPTION’ ... OK * this is package ‘wsMed’ version ‘1.2.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘wsMed’ can be installed ... [15s/21s] OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [26s/29s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [149s/183s] [149s/184s] ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(wsMed) > test_check("wsMed") This is lavaan 0.7-3 lavaan is FREE software! Please report any bugs. Attaching package: 'mice' The following object is masked from 'package:stats': filter The following objects are masked from 'package:base': cbind, rbind Class: mids Number of multiple imputations: 1 Imputation methods: C1 C2 A1 B1 D1 D2 C3 W_cont "" "pmm" "pmm" "" "" "" "" "" PredictorMatrix: C1 C2 A1 B1 D1 D2 C3 W_cont C1 0 1 1 1 1 1 1 1 C2 1 0 1 1 1 1 1 1 A1 1 1 0 1 1 1 1 1 B1 1 1 1 0 1 1 1 1 D1 1 1 1 1 0 1 1 1 D2 1 1 1 1 1 0 1 1 Class: mids Number of multiple imputations: 1 Imputation methods: C1 C2 A1 B1 D1 D2 C3 W_cont "" "pmm" "pmm" "" "" "" "" "" PredictorMatrix: C1 C2 A1 B1 D1 D2 C3 W_cont C1 0 1 1 1 1 1 1 1 C2 1 0 1 1 1 1 1 1 A1 1 1 0 1 1 1 1 1 B1 1 1 1 0 1 1 1 1 D1 1 1 1 1 0 1 1 1 D2 1 1 1 1 1 0 1 1 Class: mids Number of multiple imputations: 1 Imputation methods: C1 C2 A1 B1 D1 D2 C3 W_cont "" "pmm" "pmm" "" "" "" "" "" PredictorMatrix: C1 C2 A1 B1 D1 D2 C3 W_cont C1 0 1 1 1 1 1 1 1 C2 1 0 1 1 1 1 1 1 A1 1 1 0 1 1 1 1 1 B1 1 1 1 0 1 1 1 1 D1 1 1 1 1 0 1 1 1 D2 1 1 1 1 1 0 1 1 Class: mids Number of multiple imputations: 1 Imputation methods: C1 C2 A1 B1 D1 D2 C3 W_cont "" "pmm" "pmm" "" "" "" "" "" PredictorMatrix: C1 C2 A1 B1 D1 D2 C3 W_cont C1 0 1 1 1 1 1 1 1 C2 1 0 1 1 1 1 1 1 A1 1 1 0 1 1 1 1 1 B1 1 1 1 0 1 1 1 1 D1 1 1 1 1 0 1 1 1 D2 1 1 1 1 1 0 1 1 Class: mids Number of multiple imputations: 1 Imputation methods: C1 C2 A1 B1 D1 D2 C3 W_bin "" "pmm" "pmm" "" "" "" "" "" PredictorMatrix: C1 C2 A1 B1 D1 D2 C3 W_bin C1 0 1 1 1 1 1 1 1 C2 1 0 1 1 1 1 1 1 A1 1 1 0 1 1 1 1 1 B1 1 1 1 0 1 1 1 1 D1 1 1 1 1 0 1 1 1 D2 1 1 1 1 1 0 1 1 Class: mids Number of multiple imputations: 1 Imputation methods: C1 C2 A1 B1 D1 D2 C3 W_fac3 "" "pmm" "pmm" "" "" "" "" "polyreg" PredictorMatrix: C1 C2 A1 B1 D1 D2 C3 W_fac3 C1 0 1 1 1 1 1 1 1 C2 1 0 1 1 1 1 1 1 A1 1 1 0 1 1 1 1 1 B1 1 1 1 0 1 1 1 1 D1 1 1 1 1 0 1 1 1 D2 1 1 1 1 1 0 1 1 Class: mids Number of multiple imputations: 1 Imputation methods: C1 C2 A1 B1 D1 D2 C3 W_cont "" "pmm" "pmm" "" "" "" "" "" PredictorMatrix: C1 C2 A1 B1 D1 D2 C3 W_cont C1 0 1 1 1 1 1 1 1 C2 1 0 1 1 1 1 1 1 A1 1 1 0 1 1 1 1 1 B1 1 1 1 0 1 1 1 1 D1 1 1 1 1 0 1 1 1 D2 1 1 1 1 1 0 1 1 Saving _problems/test-choice-case-138.R Saving _problems/test-choice-case-139.R Saving _problems/test-modular-workflow-77.R Outcome Difference Model (Ydiff): Ydiff ~ cp*1 + b1*M1diff + d1*M1avg Mediator Difference Model (Chained Mediator - M1diff): M1diff ~ a1*1 Mediator Difference Model (Other Mediators): M2diff ~ a2*1 + b_1_2*M1diff + d_1_2*M1avg Indirect Effects: indirect_1 := a1 * b1 indirect_1_2 := a1 * b_1_2 * b2 Total Indirect Effect: total_indirect := indirect_1 + indirect_1_2 Total Effect: total_effect := cp + total_indirect wsMed analysis Model: P | DE | Observations: 100 Effects: wsMed all | raw scale | mc 90% percentile intervals; 100 joint draws; SE from effect draws Condition contrast: after - before Estimate Std. Error CI lower CI upper cp: Direct effect -0.031795 0.017008 -0.059532 -0.005678 indirect_1: A 0.001311 0.003191 -0.003418 0.007005 indirect_2: B -0.001120 0.002749 -0.005918 0.002163 total_indirect: Total indirect effect 0.000191 0.004454 -0.007193 0.007406 total: Total effect -0.031604 0.017326 -0.059226 -0.005890 Inference draws: 100 retained of 100 ; 0 excluded before effect extraction. Use as.data.frame() for the full-precision table and metadata. Post-fit admissibility: 1 of 1 ; excluded rows: 0 Saving _problems/test-workflow-support-44.R Saving _problems/test-workflow-support-45.R Saving _problems/test-workflow-support-46.R Saving _problems/test-workflow-support-50.R Saving _problems/test-workflow-support-74.R Saving _problems/test-workflow-support-75.R Saving _problems/test-workflow-support-74.R Saving _problems/test-workflow-support-75.R [ FAIL 11 | WARN 0 | SKIP 8 | PASS 1845 ] ══ Skipped tests (8) ═══════════════════════════════════════════════════════════ • On CRAN (8): 'test-WsMed.R:135:3', 'test-WsMed.R:162:3', 'test-modular-workflow.R:219:3', 'test-print.WsMed.R:81:3', 'test-product-covariances.R:123:3', 'test-product-covariances.R:283:3', 'test-workflow-presentation.R:185:3', 'test-workflow-reliability.R:169:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-choice-case.R:138:5'): real model fits give equal results after case normalization ── Expected `actual$mc$result$thetahatstar` to equal `reference$mc$result$thetahatstar`. Differences: actual vs expected [, 1] [, 2] [, 3] [, 4] [, 5] [, 6] [, 7] [, 8] [, 9] [,10] [,11] [,12] [,13] [,14] [,15] [,16] [,17] [,18] [,19] [,20] [,21] [,22] [,23] [,24] [,25] [,26] [,27] [,28] [,29] [,30] [,31] [,32] [,33] [,34] [,35] [,36] [,37] [,38] - actual[1, ] -0.011582811 -0.0577713269 -0.0784225744 -0.1488580232 0.111100204 -0.1023200616 -0.12032459 -0.010156680 0.0414794437 0.45168159 -0.2159099525 1.127775e-02 0.008523521 -0.010979368 -0.122776941 -0.116468117 0.02445565 0.03225889 0.02198054 0.02869516 0.02994180 0.009263748 0.007506065 0.03711802 0.016046674 0.02985420 0.016686176 -7.331637e-03 -0.0089268385 5.867649e-04 -6.174548e-03 -1.153940e-03 6.828989e-04 8.857917e-06 5.210873e-04 -5.763174e-05 -5.586511e-03 -0.017169322 + expected[1, ] -0.011582811 -0.0577713269 -0.0784225744 -0.1488580232 0.111100204 -0.1023200616 -0.12032459 -0.010156680 0.0292324394 0.01404853 0.1003384490 1.128272e-02 0.008009598 -0.004681899 -0.124065684 -0.107988014 0.02445565 0.03225889 0.02198054 0.02869516 0.02994180 0.009263748 0.007506065 0.03711802 0.016046674 0.02985420 0.016686176 -7.331637e-03 -0.0089268385 5.867649e-04 -4.351483e-03 -1.154448e-03 2.124003e-05 8.323831e-06 3.710885e-04 -1.811320e-06 -4.520325e-03 -0.016103136 - actual[2, ] -0.031191625 -0.0426491059 -0.0052826466 -0.1957698587 -0.087028876 0.0528309784 -0.12732520 -0.029023593 0.0143707786 0.36416052 0.0120550728 -2.323384e-03 -0.116852438 -0.044185428 -0.088184995 -0.193769710 0.01856065 0.03138890 0.02182079 0.03500089 0.04245566 0.011024755 0.006266668 0.03803501 0.006122426 0.02298254 0.006613965 2.522726e-03 -0.0254951687 1.237830e-03 -2.813365e-03 -1.227467e-04 2.069140e-03 1.791751e-04 -6.695201e-05 4.924106e-05 5.323224e-04 -0.030659303 + expected[2, ] -0.031191625 -0.0426491059 -0.0052826466 -0.1957698587 -0.087028876 0.0528309784 -0.12732520 -0.029023593 0.0070608587 0.10294869 -0.1276265764 -2.244452e-03 -0.125017608 0.055868192 -0.108660438 -0.059038586 0.01856065 0.03138890 0.02182079 0.03500089 0.04245566 0.011024755 0.006266668 0.03803501 0.006122426 0.02298254 0.006613965 2.522726e-03 -0.0254951687 1.237830e-03 -1.382303e-03 -1.185766e-04 5.849487e-04 1.916951e-04 -4.053383e-05 1.715268e-05 4.902131e-04 -0.030701412 - actual[3, ] -0.027693610 0.0941740986 0.1282756820 -0.0596067097 -0.079226595 -0.0598982515 -0.32723766 -0.039375654 0.0390436037 0.20635506 -0.0211794224 2.424702e-02 -0.130101193 -0.181833522 -0.061009654 -0.039665928 0.02689646 0.03063205 0.02551833 0.03157701 0.02794063 0.007340099 0.011218363 0.04037547 0.011201718 0.02820203 -0.023815883 -2.145684e-02 -0.0091019041 -3.708167e-03 -2.327261e-03 -1.452354e-03 4.843263e-04 -3.068479e-04 1.426798e-04 -2.969310e-05 -7.197316e-03 -0.034890927 + expected[3, ] -0.027693610 0.0941740986 0.1282756820 -0.0596067097 -0.079226595 -0.0598982515 -0.32723766 -0.039375654 0.0405204171 0.25912734 -0.0943920811 2.428989e-02 -0.134536072 -0.127489805 -0.072130808 0.033512734 0.02689646 0.03063205 0.02551833 0.03157701 0.02794063 0.007340099 0.011218363 0.04037547 0.011201718 0.02820203 -0.023815883 -2.145684e-02 -0.0091019041 -3.708167e-03 -2.415289e-03 -1.454922e-03 6.081856e-04 -3.173077e-04 1.750688e-04 -4.408349e-05 -7.156514e-03 -0.034850124 - actual[4, ] -0.066589712 -0.2781445736 -0.2358486680 0.0506620660 0.210657487 0.0855452290 -0.16000345 -0.031964721 -0.0035631997 0.28805296 -0.0829771031 3.185687e-02 -0.073953539 0.027302792 -0.178199526 -0.154262307 0.02732424 0.02890144 0.02510517 0.02545782 0.03307155 0.017087468 0.012487128 0.05247190 0.012512542 0.03320144 0.003760258 9.314791e-03 -0.0223912121 8.890814e-03 -1.805191e-04 2.725203e-03 -4.664726e-04 2.022207e-04 5.431784e-05 1.403607e-04 1.136592e-02 -0.055223788 + expected[4, ] -0.066589712 -0.2781445736 -0.2358486680 0.0506620660 0.210657487 0.0855452290 -0.16000345 -0.031964721 -0.0065886994 0.17994010 -0.0325944005 3.185882e-02 -0.074155050 0.029772050 -0.178704846 -0.150937231 0.02732424 0.02890144 0.02510517 0.02545782 0.03307155 0.017087468 0.012487128 0.05247190 0.012512542 0.03320144 0.003760258 9.314791e-03 -0.0223912121 8.890814e-03 -3.337971e-04 2.725370e-03 -2.913948e-04 2.027717e-04 1.007237e-04 8.792877e-05 1.138242e-02 -0.055207296 - actual[5, ] -0.021697449 -0.0849788539 0.0250725281 0.0279253424 -0.016510147 0.0279152094 -0.08797652 -0.007571364 0.0403484908 0.19145965 -0.0465822823 3.772728e-02 0.050597619 -0.082622241 -0.292235833 -0.018774364 0.02713032 0.02760791 0.01635977 0.02841557 0.03480111 0.008780793 0.007915268 0.04060554 0.010516184 0.02767342 -0.005033999 -1.621135e-02 -0.0068332601 6.434058e-04 1.126745e-03 1.053165e-03 -4.048087e-05 -1.069412e-05 -3.291559e-04 1.182567e-05 2.454811e-03 -0.019242638 + expected[5, ] -0.021697449 -0.0849788539 0.0250725281 0.0279253424 -0.016510147 0.0279152094 -0.08797652 -0.007571364 0.0426562947 0.27392645 -0.0689892213 3.768198e-02 0.055283658 -0.140043606 -0.280484855 -0.096097354 0.02713032 0.02760791 0.01635977 0.02841557 0.03480111 0.008780793 0.007915268 0.04060554 0.010516184 0.02767342 -0.005033999 -1.621135e-02 -0.0068332601 6.434058e-04 1.191192e-03 1.051900e-03 -5.791707e-05 -1.168454e-05 -3.339900e-04 1.623897e-05 2.499145e-03 -0.019198304 - actual[6, ] -0.033899952 -0.0375178711 0.0507439292 -0.1633537276 0.061893723 0.0109606525 -0.35851296 -0.017475480 0.0177212903 0.18592732 -0.0450750650 1.857570e-02 -0.124182136 -0.248926661 -0.004719415 -0.073338409 0.02723464 0.02479510 0.02934821 0.02878080 0.02781964 0.009523036 0.015964959 0.03641827 0.008013972 0.02572808 -0.021491409 -2.869576e-03 -0.0103958834 6.556428e-04 -2.894839e-03 2.036018e-04 5.307639e-04 2.378618e-05 -9.166846e-07 1.680726e-07 -1.481793e-03 -0.035381745 + expected[6, ] -0.033899952 -0.0375178711 0.0507439292 -0.1633537276 0.061893723 0.0109606525 -0.35851296 -0.017475480 0.0203739055 0.28071557 -0.0704964386 1.868718e-02 -0.135714226 -0.107615784 -0.033637938 0.116949292 0.02723464 0.02479510 0.02934821 0.02878080 0.02781964 0.009523036 0.015964959 0.03641827 0.008013972 0.02572808 -0.021491409 -2.869576e-03 -0.0103958834 6.556428e-04 -3.328153e-03 2.048237e-04 8.013545e-04 2.599506e-05 -7.511732e-06 1.808679e-06 -1.646040e-03 -0.035545992 - actual[7, ] -0.041478349 0.0043851965 -0.0862738592 -0.1083932715 0.066631617 0.0450321537 -0.23966247 -0.005430800 0.0093173720 0.15505378 -0.0368268020 2.036751e-02 -0.035872901 -0.077618194 -0.149261986 -0.098829397 0.03469648 0.03088611 0.02648690 0.03528869 0.02780375 0.010764867 0.009513771 0.03311566 0.008441115 0.02999043 -0.007449736 -2.601553e-02 -0.0006781039 -2.381513e-05 -1.009940e-03 9.171927e-04 9.127430e-05 8.773099e-06 -6.262754e-05 5.660022e-06 -7.348295e-05 -0.041551832 + expected[7, ] -0.041478349 0.0043851965 -0.0862738592 -0.1083932715 0.066631617 0.0450321537 -0.23966247 -0.005430800 0.0137097574 0.31201078 -0.0787447016 2.039113e-02 -0.038316575 -0.047674126 -0.155389881 -0.058507038 0.03469648 0.03088611 0.02648690 0.03528869 0.02780375 0.010764867 0.009513771 0.03311566 0.008441115 0.02999043 -0.007449736 -2.601553e-02 -0.0006781039 -2.381513e-05 -1.486045e-03 9.182565e-04 1.836689e-04 9.370725e-06 -9.593459e-05 1.185711e-05 -4.826419e-04 -0.041960991 - actual[8, ] -0.052082610 -0.0047665093 -0.1216526841 -0.1943852642 -0.087434771 -0.0134247286 -0.07828559 -0.024684167 0.0089200852 0.17438466 0.0978132667 1.070671e-02 0.061010971 0.068462428 -0.094573600 -0.092488615 0.03400661 0.02962867 0.03432531 0.03340173 0.02998960 0.011518629 0.005496248 0.04872622 0.013149649 0.02375890 0.009413733 5.015277e-03 0.0106364576 1.176573e-04 -1.733933e-03 -1.437347e-04 8.367392e-04 2.021771e-05 1.132516e-05 -5.465151e-06 -8.971937e-04 -0.052979804 + expected[8, ] -0.052082610 -0.0047665093 -0.1216526841 -0.1943852642 -0.087434771 -0.0134247286 -0.07828559 -0.024684167 0.0122320035 0.29273237 -0.2133847703 1.065563e-02 0.066295855 0.003702996 -0.081320925 -0.179692967 0.03400661 0.02962867 0.03432531 0.03340173 0.02998960 0.011518629 0.005496248 0.04872622 0.013149649 0.02375890 0.009413733 5.015277e-03 0.0106364576 1.176573e-04 -2.377721e-03 -1.430489e-04 1.404600e-03 2.196900e-05 1.335382e-05 -7.888548e-06 -9.710788e-04 -0.053053689 - actual[9, ] -0.039683666 -0.1881838720 -0.0172126991 -0.1225285114 0.083149572 -0.0200654633 -0.01114504 -0.019927261 0.0306719369 0.39741630 -0.0785579757 1.854347e-02 -0.126676912 -0.005150854 -0.107887914 -0.169058637 0.02780765 0.01975192 0.02806245 0.03409840 0.03904231 0.009145557 0.010796610 0.04622802 0.007441141 0.02696785 -0.023065539 -1.596801e-02 -0.0315936280 3.749989e-03 -3.758187e-03 -3.720833e-04 9.703545e-04 -5.065173e-05 6.639925e-05 -1.714412e-05 5.886771e-04 -0.039094989 + expected[9, ] -0.039683666 -0.1881838720 -0.0172126991 -0.1225285114 0.083149572 -0.0200654633 -0.01114504 -0.019927261 0.0214766595 0.06883331 -0.0370135279 1.857986e-02 -0.130441481 0.040979075 -0.117328160 -0.106940573 0.02780765 0.01975192 0.02806245 0.03409840 0.03904231 0.009145557 0.010796610 0.04622802 0.007441141 0.02696785 -0.023065539 -1.596801e-02 -0.0315936280 3.749989e-03 -2.631503e-03 -3.728135e-04 1.680674e-04 -5.215699e-05 5.056129e-05 -3.229221e-06 9.089150e-04 -0.038774751 - actual[10, ] -0.044128360 0.0052397161 -0.0538071130 -0.1233231951 0.124389258 0.0270094949 -0.07123545 -0.036920453 0.0192735157 0.22793425 -0.0418483597 4.873238e-02 -0.032952019 -0.084347560 -0.072076652 -0.029444058 0.02976635 0.02861665 0.02396627 0.02905087 0.03086893 0.009418668 0.006147396 0.03383867 0.003861817 0.03075236 -0.013246060 1.515533e-02 0.0119322705 -1.934527e-04 -2.376872e-03 1.316237e-03 1.037818e-03 3.285985e-05 -3.752079e-05 1.638278e-05 -2.045469e-04 -0.044332907 + expected[10, ] -0.044128360 0.0052397161 -0.0538071130 -0.1233231951 0.124389258 0.0270094949 -0.07123545 -0.036920453 0.0195744433 0.23868757 -0.0737231439 4.871703e-02 -0.031363969 -0.103807066 -0.068094367 -0.055648019 0.02976635 0.02861665 0.02396627 0.02905087 0.03086893 0.009418668 0.006147396 0.03383867 0.003861817 0.03075236 -0.013246060 1.515533e-02 0.0119322705 -1.934527e-04 -2.413983e-03 1.315822e-03 1.086780e-03 3.127624e-05 -3.600121e-05 1.620781e-05 -1.933504e-04 -0.044321711 and 30 more ... ── Failure ('test-choice-case.R:139:5'): real model fits give equal results after case normalization ── Expected `actual$moderation` to equal `reference$moderation`. Differences: actual$IE_contrasts vs expected$IE_contrasts 2.5%CI..CI.Lo 97.5%CI..CI.Up - actual$IE_contrasts[1, ] -0.012 0.002 + expected$IE_contrasts[1, ] -0.010 0.002 actual$IE_contrasts[2, ] -0.008 0.003 actual$IE_contrasts[3, ] -0.009 0.004 actual$IE_contrasts[4, ] -0.009 0.004 actual$IE_contrasts[5, ] -0.009 0.004 actual$IE_contrasts[6, ] -0.009 0.004 - actual$IE_contrasts[7, ] -0.004 0.010 + expected$IE_contrasts[7, ] -0.003 0.008 - actual$IE_contrasts[8, ] -0.002 0.011 + expected$IE_contrasts[8, ] -0.001 0.010 - actual$IE_contrasts[9, ] -0.002 0.010 + expected$IE_contrasts[9, ] -0.002 0.009 - actual$IE_contrasts[10, ] -0.003 0.010 + expected$IE_contrasts[10, ] -0.002 0.010 and 11 more ... actual$IE_contrasts$2.5%CI..CI.Lo[1:14] vs expected$IE_contrasts$2.5%CI..CI.Lo[1:14] - -0.0120 + -0.0100 -0.0080 -0.0090 -0.0090 -0.0090 -0.0090 - -0.0040 + -0.0030 - -0.0020 + -0.0010 -0.0020 - -0.0030 + -0.0020 and 4 more ... actual$IE_contrasts$2.5%CI..CI.Lo[15:21] vs expected$IE_contrasts$2.5%CI..CI.Lo[15:21] -0.0030 -0.0020 -0.0020 - -0.0020 + -0.0010 -0.0010 -0.0010 -0.0010 actual$IE_contrasts$97.5%CI..CI.Up[4:21] vs expected$IE_contrasts$97.5%CI..CI.Up[4:21] 0.0040 0.0040 0.0040 - 0.0100 + 0.0080 - 0.0110 + 0.0100 - 0.0100 + 0.0090 0.0100 - 0.0100 + 0.0090 0.0050 0.0050 and 8 more ... actual$Xcoef vs expected$Xcoef SE 2.5%CI.Lo 97.5%CI.Up actual$Xcoef[4, ] 0.096 -0.205 0.125 actual$Xcoef[5, ] 0.084 -0.247 0.078 actual$Xcoef[6, ] 0.100 -0.065 0.298 - actual$Xcoef[7, ] 0.098 0.068 0.383 + expected$Xcoef[7, ] 0.098 0.025 0.341 - actual$Xcoef[8, ] 0.112 0.068 0.440 + expected$Xcoef[8, ] 0.112 0.084 0.456 - actual$Xcoef[9, ] 0.117 -0.320 0.124 + expected$Xcoef[9, ] 0.111 -0.305 0.083 - actual$Xcoef[10, ] 0.105 -0.193 0.191 + expected$Xcoef[10, ] 0.111 -0.177 0.192 - actual$Xcoef[11, ] 0.098 -0.304 0.049 + expected$Xcoef[11, ] 0.105 -0.331 0.042 - actual$Xcoef[12, ] 0.104 -0.284 0.096 + expected$Xcoef[12, ] 0.095 -0.234 0.122 `actual$Xcoef$SE[6:12]`: 0.1000 0.0980 0.1120 0.1170 0.1050 0.0980 0.1040 `expected$Xcoef$SE[6:12]`: 0.1000 0.0980 0.1120 0.1110 0.1110 0.1050 0.0950 actual$Xcoef$2.5%CI.Lo | expected$Xcoef$2.5%CI.Lo [4] -0.205 | -0.205 [4] [5] -0.247 | -0.247 [5] [6] -0.065 | -0.065 [6] [7] 0.068 - 0.025 [7] [8] 0.068 - 0.084 [8] [9] -0.320 - -0.305 [9] [10] -0.193 - -0.177 [10] [11] -0.304 - -0.331 [11] [12] -0.284 - -0.234 [12] actual$Xcoef$97.5%CI.Up | expected$Xcoef$97.5%CI.Up [4] 0.1250 | 0.1250 [4] [5] 0.0780 | 0.0780 [5] [6] 0.2980 | 0.2980 [6] [7] 0.3830 - 0.3410 [7] [8] 0.4400 - 0.4560 [8] [9] 0.1240 - 0.0830 [9] [10] 0.1910 - 0.1920 [10] [11] 0.0490 - 0.0420 [11] [12] 0.0960 - 0.1220 [12] ── Failure ('test-modular-workflow.R:77:5'): FIML and MI one-call and staged workflows agree, retaining every MI fit ── Expected `i$draws` to equal `x$mc$result$thetahatstar`. Differences: actual vs expected [, 1] [, 2] [, 3] [, 4] [, 5] [, 6] [, 7] [, 8] [, 9] [,10] [,11] [,12] [,13] [,14] [,15] [,16] [,17] [,18] [,19] - actual[1, ] -0.0744420284 0.123053206 -0.066934904 -0.062054219 -1.362838e-01 0.0239499202 0.0060436818 0.01876177 0.02688475 0.03239458 0.02079721 0.005857309 0.03969971 -0.0307286095 -0.0344306617 2.947114e-03 -3.750360e-04 2.572079e-03 -0.071869950 + expected[1, ] -0.0744884345 0.123054135 -0.067085765 -0.062055122 -1.362861e-01 0.0239490624 0.0229232385 0.01876017 0.02688475 0.03239458 0.02083389 0.005918673 0.03970116 0.0264250353 0.0456268465 2.947031e-03 -1.422504e-03 1.524527e-03 -0.072963908 - actual[2, ] -0.0249497912 0.002356447 0.079002370 -0.002971053 -1.793388e-01 -0.0663174223 0.0198668800 0.02182501 0.03233564 0.03420876 0.03533540 0.014369725 0.04193882 -0.0093891040 0.0113978325 -1.562735e-04 -5.902555e-05 -2.152990e-04 -0.025165090 + expected[2, ] -0.0249495283 0.002356442 0.079003224 -0.002971048 -1.793387e-01 -0.0663174175 0.0091000403 0.02182502 0.03233564 0.03420876 0.03533519 0.014369377 0.04193881 -0.0097129100 0.0109442638 -1.562731e-04 -2.703665e-05 -1.833098e-04 -0.025132838 - actual[3, ] -0.0360140380 0.039817061 -0.013774262 -0.112577671 -1.384689e-01 -0.0081775619 0.0196288718 0.02490073 0.02862003 0.03547719 0.04148460 0.016830717 0.04051807 0.0074993172 -0.0165043375 -3.256065e-04 -2.209773e-03 -2.535379e-03 -0.038549417 + expected[3, ] -0.0360258006 0.039817296 -0.013812501 -0.112577901 -1.384694e-01 -0.0081777793 0.0093380485 0.02490032 0.02862003 0.03547719 0.04149390 0.016846271 0.04051844 0.0219861011 0.0037879084 -3.256171e-04 -1.051258e-03 -1.376875e-03 -0.037402676 - actual[4, ] -0.0849584729 -0.114827884 -0.059464241 -0.074863383 -2.042685e-01 -0.0105754751 0.0222343243 0.02268091 0.03098000 0.03750575 0.03421684 0.016515661 0.03749561 -0.0167610351 -0.0404777380 1.214359e-03 -1.664537e-03 -4.501773e-04 -0.085408650 + expected[4, ] -0.0850018607 -0.114827016 -0.059605290 -0.074864228 -2.042706e-01 -0.0105762772 0.0067325960 0.02267942 0.03098000 0.03750575 0.03425114 0.016573035 0.03749696 0.0366753380 0.0343728318 1.214442e-03 -5.040306e-04 7.104117e-04 -0.084291449 - actual[5, ] -0.0220861176 0.067357313 0.039818481 -0.134005974 1.619752e-02 -0.0172163918 0.0494144417 0.01245957 0.02985185 0.03957099 0.03368596 0.012028485 0.03453774 0.0017143161 0.0092025512 -1.159650e-03 -6.621830e-03 -7.781480e-03 -0.029867598 + expected[5, ] -0.0220814027 0.067357218 0.039833808 -0.134005882 1.619775e-02 -0.0172163046 -0.0204475214 0.01245973 0.02985185 0.03957099 0.03368224 0.012022250 0.03453760 -0.0040925421 0.0010686412 -1.159642e-03 2.740088e-03 1.580446e-03 -0.020500957 - actual[6, ] -0.0368742532 -0.014862448 0.148073396 -0.159159302 -1.506760e-01 -0.0219761409 -0.0138304866 0.02557857 0.02097114 0.03458758 0.02660452 0.008687627 0.03610276 0.0054230777 0.0019585692 3.266193e-04 2.201251e-03 2.527870e-03 -0.034346383 + expected[6, ] -0.0368732195 -0.014862469 0.148076756 -0.159159282 -1.506759e-01 -0.0219761218 0.0427974069 0.02557861 0.02097114 0.03458758 0.02660371 0.008686260 0.03610273 0.0041499387 0.0001752299 3.266194e-04 -6.811605e-03 -6.484985e-03 -0.043358205 - actual[7, ] -0.0307578060 0.023574535 0.071198753 -0.224086277 -9.394379e-02 -0.0301025674 0.0547240849 0.02643786 0.03384345 0.02377692 0.02643533 0.005824711 0.04523628 0.0051304070 0.0271338711 -7.096540e-04 -1.226292e-02 -1.297257e-02 -0.043730377 + expected[7, ] -0.0307374933 0.023574129 0.071264788 -0.224085881 -9.394279e-02 -0.0301021919 -0.0257571646 0.02643856 0.03384345 0.02377692 0.02641927 0.005797851 0.04523565 -0.0198867517 -0.0079087127 -7.096329e-04 5.771817e-03 5.062184e-03 -0.025675309 - actual[8, ] -0.0257893382 -0.045134102 -0.018428754 0.052977789 -1.902454e-02 -0.0171605099 0.0050377514 0.02282632 0.02701640 0.03409695 0.02514265 0.010237141 0.03299574 0.0069631501 -0.0012044301 7.745242e-04 2.668889e-04 1.041413e-03 -0.024747925 + expected[8, ] -0.0257896577 -0.045134096 -0.018429793 0.052977783 -1.902455e-02 -0.0171605158 0.0239291689 0.02282631 0.02701640 0.03409695 0.02514290 0.010237564 0.03299575 0.0073566713 -0.0006532084 7.745244e-04 1.267714e-03 2.042239e-03 -0.023747419 - actual[9, ] -0.0283832767 0.113449258 0.090223156 -0.154746603 -2.774325e-02 -0.0128978947 0.0273398621 0.02324586 0.02745810 0.04052558 0.03303506 0.013322647 0.04161183 0.0096616226 0.0120604490 -1.463257e-03 -4.230751e-03 -5.694007e-03 -0.034077284 + expected[9, ] -0.0283720784 0.113449033 0.090259561 -0.154746385 -2.774270e-02 -0.0128976877 0.0016270582 0.02324624 0.02745810 0.04052558 0.03302621 0.013307839 0.04161148 -0.0041302500 -0.0072584057 -1.463230e-03 -2.517814e-04 -1.715012e-03 -0.030087090 - actual[10, ] -0.0659141712 -0.175397086 0.091592010 -0.002054598 8.127342e-02 -0.0092048274 0.0123155700 0.02641700 0.03017963 0.03189359 0.03592277 0.011254161 0.04308580 -0.0144101608 -0.0157535262 1.614500e-03 -2.530355e-05 1.589196e-03 -0.064324975 + expected[10, ] -0.0659375207 -0.175396618 0.091516104 -0.002055053 8.127227e-02 -0.0092052590 0.0166513503 0.02641620 0.03017963 0.03189359 0.03594123 0.011285037 0.04308653 0.0143470404 0.0245278920 1.614571e-03 -3.421941e-05 1.580352e-03 -0.064357169 and 70 more ... ── Failure ('test-workflow-support.R:44:3'): binary type decisions remain explicit and interfaces agree for factors ── Expected `coef(explicit)` to equal `coef(staged)`. Differences: actual | expected [1] -0.045229001 - -0.045229002 [1] [2] -0.134390994 | -0.134390994 [2] [3] -0.073697407 | -0.073697407 [3] [4] 0.122401490 | 0.122401490 [4] [5] 0.024553905 - 0.024553904 [5] [6] -0.016712266 - -0.016712262 [6] [7] -0.020823828 - -0.020823833 [7] [8] -0.002403109 | -0.002403109 [8] [9] -0.037570827 - -0.037570828 [9] [10] 0.018041801 | 0.018041801 [10] ... ... ... and 9 more ... ── Failure ('test-workflow-support.R:45:3'): binary type decisions remain explicit and interfaces agree for factors ── Expected `coef(auto)` to equal `coef(explicit)`. Differences: actual | expected [1] -0.045229002 - -0.045229001 [1] [2] -0.134390994 | -0.134390994 [2] [3] -0.073697407 | -0.073697407 [3] [4] 0.122401490 | 0.122401490 [4] [5] 0.024553904 - 0.024553905 [5] [6] -0.016712262 - -0.016712266 [6] [7] -0.020823833 - -0.020823828 [7] [8] -0.002403109 | -0.002403109 [8] [9] -0.037570828 - -0.037570827 [9] [10] 0.018041801 | 0.018041801 [10] ... ... ... and 9 more ... ── Failure ('test-workflow-support.R:46:3'): binary type decisions remain explicit and interfaces agree for factors ── Expected `auto$moderation$conditional_IE` to equal `explicit$moderation$conditional_IE`. Differences: actual vs expected SE 2.5%CI.Lo 97.5%CI.Up - actual[1, ] 0.00524500 -0.00803612 0.01326150 + expected[1, ] 0.00657857 -0.00286993 0.02239100 - actual[2, ] 0.00507836 -0.00843501 0.00946149 + expected[2, ] 0.00533753 -0.01099049 0.01239208 `actual$SE`: 0.00524 0.00508 `expected$SE`: 0.00658 0.00534 `actual$2.5%CI.Lo`: -0.0080 -0.0084 `expected$2.5%CI.Lo`: -0.0029 -0.0110 `actual$97.5%CI.Up`: 0.0133 0.0095 `expected$97.5%CI.Up`: 0.0224 0.0124 ── Failure ('test-workflow-support.R:50:3'): binary type decisions remain explicit and interfaces agree for factors ── Expected `first[columns]` to equal `second[columns]`. Differences: actual vs expected estimate std.error conf.low conf.high - actual[1, ] 0.0022459781 0.006578567 -0.002869929 0.022390998 + expected[1, ] 0.0022459775 0.005245003 -0.008036117 0.013261499 - actual[2, ] 0.0004500392 0.005337528 -0.010990490 0.012392081 + expected[2, ] 0.0004500392 0.005078364 -0.008435007 0.009461488 `actual$estimate`: 0.002245978 0.000450039 `expected$estimate`: 0.002245977 0.000450039 `actual$std.error`: 0.00658 0.00534 `expected$std.error`: 0.00525 0.00508 `actual$conf.low`: -0.0029 -0.0110 `expected$conf.low`: -0.0080 -0.0084 `actual$conf.high`: 0.0224 0.0124 `expected$conf.high`: 0.0133 0.0095 ── Failure ('test-workflow-support.R:74:5'): declared binary and multicategory factors agree without type overrides ── Expected `as.data.frame(first)[columns]` to equal `as.data.frame(second)[columns]`. Differences: actual vs expected std.error conf.low conf.high - actual[1, ] 0.01385024 -0.018283327 0.03763971 + expected[1, ] 0.01388989 -0.018626013 0.03771510 - actual[2, ] 0.01320496 -0.009396709 0.04651432 + expected[2, ] 0.01321090 -0.009368340 0.04514266 `actual$std.error`: 0.0138502 0.0132050 `expected$std.error`: 0.0138899 0.0132109 `actual$conf.low`: -0.018283 -0.009397 `expected$conf.low`: -0.018626 -0.009368 `actual$conf.high`: 0.037640 0.046514 `expected$conf.high`: 0.037715 0.045143 ── Failure ('test-workflow-support.R:75:5'): declared binary and multicategory factors agree without type overrides ── Expected `first$draws` to equal `second$draws`. Differences: actual vs expected [,1] [,2] - actual[1, ] 0.0189548487 1.371251e-02 + expected[1, ] 0.0188509310 1.346193e-02 - actual[2, ] 0.0158324381 1.801530e-02 + expected[2, ] 0.0163085660 1.732648e-02 - actual[3, ] -0.0033501779 -4.416779e-03 + expected[3, ] -0.0031581186 -5.165497e-03 - actual[4, ] 0.0071351173 1.791514e-02 + expected[4, ] 0.0073275726 1.801994e-02 - actual[5, ] 0.0425131019 -9.831495e-05 + expected[5, ] 0.0424423386 -1.124729e-04 - actual[6, ] 0.0083097325 1.581113e-02 + expected[6, ] 0.0090566109 1.401479e-02 - actual[7, ] 0.0035261318 -8.761889e-03 + expected[7, ] 0.0034776067 -8.832795e-03 - actual[8, ] -0.0054950990 3.110086e-02 + expected[8, ] -0.0052987862 3.168051e-02 - actual[9, ] 0.0030756883 6.791828e-03 + expected[9, ] 0.0030360990 7.012616e-03 - actual[10, ] 0.0035467644 2.451289e-02 + expected[10, ] 0.0035142851 2.515447e-02 and 190 more ... ── Failure ('test-workflow-support.R:74:5'): declared binary and multicategory factors agree without type overrides ── Expected `as.data.frame(first)[columns]` to equal `as.data.frame(second)[columns]`. Differences: actual vs expected std.error conf.low conf.high - actual[1, ] 0.07986900 -0.10229666 0.2112783 + expected[1, ] 0.07971224 -0.10400991 0.2178454 - actual[2, ] 0.07549466 -0.05835828 0.2600342 + expected[2, ] 0.07605647 -0.05382663 0.2443994 `actual$std.error`: 0.07987 0.07549 `expected$std.error`: 0.07971 0.07606 `actual$conf.low`: -0.1023 -0.0584 `expected$conf.low`: -0.1040 -0.0538 `actual$conf.high`: 0.2113 0.2600 `expected$conf.high`: 0.2178 0.2444 ── Failure ('test-workflow-support.R:75:5'): declared binary and multicategory factors agree without type overrides ── Expected `first$draws` to equal `second$draws`. Differences: actual vs expected [,1] [,2] - actual[1, ] 0.105038757 0.0759881952 + expected[1, ] 0.116259342 0.0830237774 - actual[2, ] 0.121325811 0.1380533007 + expected[2, ] 0.080195206 0.0852006633 - actual[3, ] -0.018950195 -0.0249833993 + expected[3, ] -0.017336084 -0.0283553269 - actual[4, ] 0.038730536 0.0972461723 + expected[4, ] 0.044886607 0.1103849864 - actual[5, ] 0.248478966 -0.0005746275 + expected[5, ] 0.249004801 -0.0006598667 - actual[6, ] 0.047545244 0.0904654816 + expected[6, ] 0.050899980 0.0787659340 - actual[7, ] 0.018975872 -0.0471520901 + expected[7, ] 0.023408647 -0.0594557663 - actual[8, ] -0.030239481 0.1711477758 + expected[8, ] -0.030719670 0.1836674923 - actual[9, ] 0.018169114 0.0401215852 + expected[9, ] 0.016245291 0.0375224858 - actual[10, ] 0.020925550 0.1446235886 + expected[10, ] 0.018941464 0.1355787824 and 190 more ... [ FAIL 11 | WARN 0 | SKIP 8 | PASS 1845 ] Error: ! Test failures. Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [31s/31s] OK * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/data/localhost/ripley/R/packages/tests-MKL/wsMed.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 5:52.65, 278.56 + 16.97