* using log directory ‘/data/gannet/ripley/R/packages/tests-MKL/wikiprofiler.Rcheck’
* using R Under development (unstable) (2025-04-10 r88129)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘wikiprofiler/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘wikiprofiler’ version ‘0.1.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘wikiprofiler’ can be installed ... [10s/24s] OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [13s/35s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [3s/11s] ERROR
Running examples in ‘wikiprofiler-Ex.R’ failed
The error most likely occurred in:

> ### Name: wpplot
> ### Title: Input specific wikipathways ID to get an output in class of
> ###   wpplot.
> ### Aliases: wpplot
> 
> ### ** Examples
> 
> if (yulab.utils::has_internet())
+    wpplot('WP179') 
Warning in (function (con = stdin(), n = -1L, ok = TRUE, warn = TRUE, encoding = "unknown",  :
  incomplete final line found on 'https://www.wikipathways.org/wikipathways-assets/pathways/WP179/WP179.svg'
Error in rsvg::rsvg_nativeraster(f) : 
  Failed to parse svg: XML parse error: Error domain 1 code 73 on line 1 column 294913 of data: Couldn't find end of Start Tag g line 1
Calls: <Anonymous> ... annotation_custom -> layer -> as.grob -> as.grob.wpplot -> <Anonymous>
Execution halted
* checking PDF version of manual ... [7s/14s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/gannet/ripley/R/packages/tests-MKL/wikiprofiler.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 3:22.51, 70.89 + 9.88