* using log directory ‘/data/localhost/ripley/R/packages/tests-MKL/tidymatrix.Rcheck’ * using R Under development (unstable) (2026-10-30 r90795) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2) GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2) * running under: Fedora Linux 44 (Server Edition) * using session charset: UTF-8 * current time: 2026-10-30 11:27:36 UTC * using option ‘--no-stop-on-test-error’ * checking for file ‘tidymatrix/DESCRIPTION’ ... OK * this is package ‘tidymatrix’ version ‘0.1.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘tidymatrix’ can be installed ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [8s/21s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [6s/12s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [12s/29s] [13s/29s] ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(tidymatrix) > > test_check("tidymatrix") Attaching package: 'dplyr' The following objects are masked from 'package:stats': filter, lag The following objects are masked from 'package:base': intersect, setdiff, setequal, union Comparing condition: treatment = 'Treatment' vs control = 'Control' Comparing condition: treatment = 'Treatment' vs control = 'Control' Comparing condition: treatment = 'Treatment' vs control = 'Control' Comparing condition: treatment = 'Treatment' vs control = 'Control' Comparing condition: treatment = 'Treatment' vs control = 'Control' Comparing condition: treatment = 'Treatment' vs control = 'Control' Comparing condition: treatment = 'Treatment' vs control = 'Control' Comparing condition: treatment = 'Treatment' vs control = 'Control' Saving _problems/test-dimreduction-187.R Saving _problems/test-dimreduction-188.R Comparing condition: treatment = 'Treatment' vs control = 'Control' Joining with `by = join_by(id)` Comparing condition: treatment = 'Treatment' vs control = 'Control' [ FAIL 2 | WARN 29 | SKIP 0 | PASS 784 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-dimreduction.R:187:3'): compute_tsne with same seed gives same results ── Expected `result1$row_data$row_tsne_1` to equal `result2$row_data$row_tsne_1`. Differences: actual | expected [1] -1.87 - 26.19 [1] [2] 1.23 - 14.16 [2] [3] 8.42 - -21.54 [3] [4] 1.26 - -10.15 [4] [5] -3.31 - 1.49 [5] [6] -6.50 - 13.90 [6] [7] -7.48 - 13.08 [7] [8] 4.72 - -16.23 [8] [9] 7.52 - -20.01 [9] [10] 3.82 - -33.96 [10] ... ... ... and 40 more ... ── Failure ('test-dimreduction.R:188:3'): compute_tsne with same seed gives same results ── Expected `result1$row_data$row_tsne_2` to equal `result2$row_data$row_tsne_2`. Differences: actual | expected [1] -5.406 - -1.106 [1] [2] 0.405 - 8.959 [2] [3] -4.969 - 28.716 [3] [4] 6.584 - 0.951 [4] [5] 1.512 - -12.658 [5] [6] -1.328 - -19.284 [6] [7] 3.146 - -36.908 [7] [8] -4.254 - 15.906 [8] [9] -5.006 - 24.764 [9] [10] 0.979 - 21.090 [10] ... ... ... and 40 more ... [ FAIL 2 | WARN 29 | SKIP 0 | PASS 784 ] Error: ! Test failures. Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [39s/87s] OK * checking PDF version of manual ... [5s/13s] OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/data/localhost/ripley/R/packages/tests-MKL/tidymatrix.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 3:56.48, 92.90 + 10.59