* using log directory ‘/data/localhost/ripley/R/packages/tests-MKL/tf.Rcheck’ * using R Under development (unstable) (2026-10-30 r90795) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2) GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2) * running under: Fedora Linux 44 (Server Edition) * using session charset: UTF-8 * current time: 2026-10-30 11:09:10 UTC * using option ‘--no-stop-on-test-error’ * checking for file ‘tf/DESCRIPTION’ ... OK * this is package ‘tf’ version ‘0.5.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘tf’ can be installed ... [16s/40s] OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [26s/62s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [14s/32s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [87s/203s] [87s/203s] ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(checkmate) > library(tf) Attaching package: 'tf' The following objects are masked from 'package:stats': fivenum, sd, var The following object is masked from 'package:datasets': gait The following object is masked from 'package:base': rank > > test_check("tf") Tracing function "matlines" in package "graphics" Percentage of input data variability preserved in basis representation (per functional observation, approximate): Min. 1st Qu. Median Mean 3rd Qu. Max. 47.1 57.6 68.1 68.1 78.6 89.1 Percentage of input data variability preserved in basis representation (per functional observation, approximate): Min. 1st Qu. Median Mean 3rd Qu. Max. 49.70 91.38 94.30 87.83 97.90 99.20 tfd_mv[0] (): [NA, NA] -> R^0 x Differentiating over irregular grids can be unstable. x Differentiating over irregular grids can be unstable. x Differentiating over irregular grids can be unstable. x Differentiating over irregular grids can be unstable. Percentage of input data variability preserved in basis representation (per functional observation, approximate): Min. 1st Qu. Median Mean 3rd Qu. Max. 99.80 99.80 99.80 99.83 99.85 99.90 Percentage of input data variability preserved in basis representation (per functional observation, approximate): Min. 1st Qu. Median Mean 3rd Qu. Max. 99.9 99.9 99.9 99.9 99.9 99.9 Call: tf_register(x = x, type = "shift", method = "affine") 3 curves on [0, 6.28318530717959] Components: aligned, inv_warps, template, original data tf_register(x = x, type = "shift", method = "affine") 3 curve(s) on [0, 6.283185] Amplitude variance reduction: 100% Inverse warp deviations from identity (relative to domain length): 0% 10% 25% 50% 75% 90% 100% 0.0000 0.0181 0.0454 0.0907 0.0907 0.0907 0.0907 Inverse warp slopes (1 = identity): overall range: [1, 1] per-curve slopes: 0% 10% 25% 50% 75% 90% 100% 1 1 1 1 1 1 1 Domain coverage loss after alignment (fraction of original range): 0% 10% 25% 50% 75% 90% 100% 0.000 0.010 0.025 0.050 0.050 0.050 0.050 Iterative registration stopped after 1 of 3 iterations: alignment worsened (objective 0.0072 > 0.0069 against the current template). Iterative registration stopped after 1 of 3 iterations: alignment worsened (objective 0.0072 > 0.0069 against the current template). Iterative registration reached `max_iter` = 2 without convergence (tol = 0.01). Iterative registration stopped after 1 of 3 iterations: alignment worsened (objective 0.1716 > 0.1703 against the current template). Iterative registration stopped after 1 of 3 iterations: alignment worsened (objective 0.1716 > 0.1703 against the current template). Iterative registration reached `max_iter` = 2 without convergence (tol = 0.01). Percentage of input data variability preserved in basis representation (per functional observation, approximate): Min. 1st Qu. Median Mean 3rd Qu. Max. 49.1 49.1 49.1 49.1 49.1 49.1 Percentage of input data variability preserved in basis representation (per functional observation, approximate): Min. 1st Qu. Median Mean 3rd Qu. Max. -4.400 -2.975 2.750 2.375 8.100 8.400 Percentage of input data variability preserved in basis representation (per functional observation, approximate): Min. 1st Qu. Median Mean 3rd Qu. Max. -5.20 -2.35 -0.25 0.35 2.45 7.10 Saving _problems/test-tfb-spline-87.R [ FAIL 1 | WARN 11 | SKIP 28 | PASS 2602 ] ══ Skipped tests (28) ══════════════════════════════════════════════════════════ • On CRAN (28): 'test-depth.R:162:3', 'test-rebase.R:34:5', 'test-rebase.R:34:5', 'test-rebase.R:34:5', 'test-rebase.R:34:5', 'test-rebase.R:34:5', 'test-rebase.R:34:5', 'test-rebase.R:34:5', 'test-rebase.R:34:5', 'test-rebase.R:82:7', 'test-rebase.R:82:7', 'test-rebase.R:82:7', 'test-rebase.R:82:7', 'test-rebase.R:82:7', 'test-rebase.R:82:7', 'test-rebase.R:82:7', 'test-rebase.R:82:7', 'test-rebase.R:125:5', 'test-rebase.R:125:5', 'test-rebase.R:125:5', 'test-rebase.R:125:5', 'test-rebase.R:125:5', 'test-rebase.R:125:5', 'test-rebase.R:125:5', 'test-rebase.R:125:5', 'test-register.R:1314:3', 'test-register.R:1330:3', 'test-register.R:1360:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-tfb-spline.R:87:3'): tfb_spline works for fda::fdSmooth input ── Expected `tfb_fdsmooth` to be identical to `tfb_fd`. Differences: actual$1 | expected$1 [16] 0.08537751676748191 | 0.08537751676748191 [16] [17] 0.53917206371537774 | 0.53917206371537774 [17] [18] 0.86933604083685101 | 0.86933604083685101 [18] [19] 1.02693517421290581 - 1.02693517421290559 [19] [20] 0.97011981454036711 - 0.97011981454036733 [20] [21] 0.73662637782363438 - 0.73662637782363416 [21] [22] 0.32348462110938958 | 0.32348462110938958 [22] [23] -0.11755782419542196 | -0.11755782419542196 [23] [24] -0.60064353119411595 | -0.60064353119411595 [24] actual$2 | expected$2 [17] 0.54927130253778256 | 0.54927130253778256 [17] [18] 0.85566952904321625 | 0.85566952904321625 [18] [19] 1.04197929901060360 | 1.04197929901060360 [19] [20] 0.95773987849406517 - 0.95773987849406561 [20] [21] 0.76631388454395444 - 0.76631388454395410 [21] [22] 0.29366544598752792 | 0.29366544598752792 [22] [23] -0.10154356623200848 | -0.10154356623200848 [23] [24] -0.60051278726257473 | -0.60051278726257473 [24] actual$3 | expected$3 [18] 0.885606663465010158 | 0.885606663465010158 [18] [19] 1.029722328850480872 | 1.029722328850480872 [19] [20] 0.976432219314211869 | 0.976432219314211869 [20] [21] 0.726689778748977111 - 0.726689778748976889 [21] [22] 0.323280529982740317 - 0.323280529982740372 [22] [23] -0.121172993696090150 - -0.121172993696090220 [23] [24] -0.590454286406673634 - -0.590454286406673523 [24] [25] -0.800116144411968655 - -0.800116144411968766 [25] actual$4 | expected$4 [19] 1.034717994066010505 | 1.034717994066010505 [19] [20] 0.951462516915533518 | 0.951462516915533518 [20] [21] 0.761004650165182150 | 0.761004650165182150 [21] [22] 0.302541787499230719 - 0.302541787499230663 [22] [23] -0.112991929148040654 - -0.112991929148040585 [23] [24] -0.579301280252903839 - -0.579301280252903950 [24] [25] -0.938600265394517352 | -0.938600265394517352 [25] actual$5 | expected$5 [19] 1.023136548885279495 | 1.023136548885279495 [19] [20] 0.980225310778819137 | 0.980225310778819137 [20] [21] 0.726072944926898223 | 0.726072944926898223 [21] [22] 0.343000270102191029 - 0.343000270102191085 [22] [23] -0.151324191416899040 - -0.151324191416899095 [23] [24] -0.530144216413373615 - -0.530144216413373504 [24] [25] -0.966335039588447575 - -0.966335039588447797 [25] [ FAIL 1 | WARN 11 | SKIP 28 | PASS 2602 ] Error: ! Test failures. Execution halted * checking PDF version of manual ... [7s/15s] OK * checking HTML version of manual ... [4s/10s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/data/localhost/ripley/R/packages/tests-MKL/tf.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 8:08.31, 194.49 + 11.47