* using log directory ‘/data/gannet/ripley/R/packages/tests-MKL/tabula.Rcheck’ * using R Under development (unstable) (2020-08-09 r78993) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘tabula/DESCRIPTION’ ... OK * this is package ‘tabula’ version ‘1.5.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘tabula’ can be installed ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [37s/37s] [37s/37s] ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(tabula) Loading required package: arkhe > > test_check("tabula") ── 1. Failure: correspondence Analysis (@test-seriation.R#44) ───────────────── indices@rows not equal to c(1, 2, 3, 4, 5). 4/5 mismatches (average diff: 3) [1] 5 - 1 == 4 [2] 4 - 2 == 2 [4] 2 - 4 == -2 [5] 1 - 5 == -4 ── 2. Failure: correspondence Analysis (@test-seriation.R#45) ───────────────── indices@columns not equal to c(14, 11, 1, 12, 3, 16, 5, 2, 15, 13, 7, 4, 6, 10, 9, 8). 16/16 mismatches (average diff: 6.75) [1] 8 - 14 == -6 [2] 9 - 11 == -2 [3] 10 - 1 == 9 [4] 6 - 12 == -6 [5] 4 - 3 == 1 [6] 7 - 16 == -9 [7] 13 - 5 == 8 [8] 15 - 2 == 13 [9] 2 - 15 == -13 ... ══ testthat results ═══════════════════════════════════════════════════════════ [ OK: 325 | SKIPPED: 33 | WARNINGS: 0 | FAILED: 2 ] 1. Failure: correspondence Analysis (@test-seriation.R#44) 2. Failure: correspondence Analysis (@test-seriation.R#45) Error: testthat unit tests failed In addition: Warning messages: 1: In library(testthat) : package 'testthat' already present in search() 2: In library(testthat) : package 'testthat' already present in search() 3: In library(testthat) : package 'testthat' already present in search() Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking re-building of vignette outputs ... [32s/32s] OK * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/data/gannet/ripley/R/packages/tests-MKL/tabula.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 2:08.40, 121.14 + 6.40