* using log directory ‘/data/localhost/ripley/R/packages/tests-MKL/surveycore.Rcheck’
* using R Under development (unstable) (2026-11-02 r90827)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
    GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
* running under: Fedora Linux 44 (Server Edition)
* using session charset: UTF-8
* current time: 2026-11-03 09:15:29 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘surveycore/DESCRIPTION’ ... OK
* this is package ‘surveycore’ version ‘1.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... INFO
Package suggested but not available for checking: 'surveytidy'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘surveycore’ can be installed ... [20s/20s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [29s/29s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [222s/224s]
 [222s/224s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(surveycore)
  > 
  > test_check("surveycore")
  i Skipped 2 surveys missing the requested variable: "w1" and "w2".
  # A survey_diffs result
  # Design: Taylor series | Family: gaussian (identity)
  # DV: y | Treatment: arm (ref: Ctrl)
  # Method: coefficient / intercept
  # A <survey_diffs> [2 × 4]
  # A tibble: 2 x 4
    arm   estimate  mean     n
    <fct>    <dbl> <dbl> <int>
  1 Ctrl      0     0.5    100
  2 T1        0.05  0.55   100
  # A survey_t_test result
  # Design: Taylor series | N: 400
  # DV: outcome | By: grp2 (A vs. B)
  # A <tbl_df> [1 × 13]
  # A tibble: 1 x 13
    level_a level_b estimate mean_a mean_b   n_a   n_b ci_low ci_high t_stat    df
    <chr>   <chr>      <dbl>  <dbl>  <dbl> <int> <int>  <dbl>   <dbl>  <dbl> <dbl>
  1 A       B           3.51   50.9   54.4   209   191   1.16    5.86   3.18    15
  # i 2 more variables: p_value <dbl>, stars <chr>
  # A survey_pairwise result
  # Design: Taylor series | N: 400
  # DV: outcome | By: grp3 (3 levels, 3 pairs)
  # Adjustment: holm
  # A <tbl_df> [3 × 13]
  # A tibble: 3 x 13
    level_a level_b estimate mean_a mean_b   n_a   n_b ci_low ci_high  t_stat
    <chr>   <chr>      <dbl>  <dbl>  <dbl> <int> <int>  <dbl>   <dbl>   <dbl>
  1 X       Y        -0.910    53.1   52.2   145   136  -3.59    1.77 -0.725 
  2 X       Z        -0.847    53.1   52.3   145   119  -3.77    2.08 -0.617 
  3 Y       Z         0.0631   52.2   52.3   136   119  -2.78    2.91  0.0473
  # i 3 more variables: df <dbl>, p_value <dbl>, stars <chr>
  i Skipped 2 surveys missing the requested variable: "w1" and "w2".
  
  -- Survey Design ---------------------------------------------------------------
  <survey_nonprob> (non-probability) [experimental]
  * Variance: SRS approximation (no bootstrap replicate weights)
  Sample size: 10
  
  # A tibble: 10 x 2
         y     w
     <int> <dbl>
   1     1     1
   2     2     1
   3     3     1
   4     4     1
   5     5     1
   6     6     1
   7     7     1
   8     8     1
   9     9     1
  10    10     1
  
  -- Survey Design Summary -------------------------------------------------------
  Type: non-probability [experimental]
  Sample size: 10
  Weighted N: 10
  
  
  -- Design --
  
  Weights: w
  * Range: 1 – 1
  * Mean: 1
  * CV: 0
  Calibration provenance: none stored
  
  Metadata: 0 of 2 variable(s) labeled
  Survey-weighted GLM
  
  Family:  gaussian (identity link)
  Formula: y1 ~ y2 + y3
  Design:  Taylor series
  
  Coefficients:
  (Intercept)          y2          y3 
      51.1868     -0.0624     -2.6042 
  
  Degrees of freedom: 16 (design-based)
  Survey-weighted GLM
  
  Call:
  survey_glm(design = .glm_taylor(), formula = y1 ~ y2 + y3) 
  
  Deviance Residuals:
       Min       1Q   Median       3Q      Max 
  -93.3797 -18.7253  -0.4633  22.9540  75.4878 
  
  Coefficients:
              Estimate Std. Error t value Pr(>|t|)    
  (Intercept) 51.1868   0.7268    70.4262  0.0000  ***
  y2          -0.0624   0.8308    -0.0752  0.9412     
  y3          -2.6042   1.4802    -1.7594  0.1003     
  ---
  Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
  
  (Dispersion parameter for gaussian family taken to be 986.9)
  
      Null deviance: 197426 on 199 degrees of freedom
  Residual deviance: 194412 on 197 degrees of freedom
  AIC: 1492
  
  Design df: 16 (taylor)
  Saving _problems/test-labelled-analysis-264.R
  Saving _problems/test-labelled-analysis-278.R
  Saving _problems/test-labelled-analysis-288.R
  Saving _problems/test-labelled-analysis-295.R
  Saving _problems/test-labelled-analysis-300.R
  x is ignored when method = 'kish'
  x is ignored when method = 'kish'
  Saving _problems/test-labelled-analysis-488.R
  # A tibble: 50 x 8
     psu   strata      fpc    wt    y1      y2    y3 group
     <chr> <chr>     <dbl> <dbl> <dbl>   <dbl> <int> <chr>
   1 psu_1 stratum_1   378  14.3  50.9 -0.122      1 A    
   2 psu_1 stratum_1   378  21.8  20.1  0.188      0 B    
   3 psu_1 stratum_1   378  14.4  52.8  0.119      1 B    
   4 psu_2 stratum_1   378  18.9  46.3 -0.0251     0 A    
   5 psu_2 stratum_1   378  23.0  51.9  0.108      0 B    
   6 psu_2 stratum_1   378  11.0  55.8 -0.485      0 C    
   7 psu_2 stratum_1   378  13.8  64.0 -0.504      0 A    
   8 psu_2 stratum_1   378  14.2  42.7 -1.66       0 B    
   9 psu_3 stratum_1   378  16.5  63.0 -0.382      1 C    
  10 psu_3 stratum_1   378  13.7  53.4 -0.513      1 A    
  # i 40 more rows
  # A tibble: 50 x 8
     psu   strata      fpc    wt    y1      y2    y3 group
     <chr> <chr>     <dbl> <dbl> <dbl>   <dbl> <int> <chr>
   1 psu_1 stratum_1   378  14.3  50.9 -0.122      1 A    
   2 psu_1 stratum_1   378  21.8  20.1  0.188      0 B    
   3 psu_1 stratum_1   378  14.4  52.8  0.119      1 B    
   4 psu_2 stratum_1   378  18.9  46.3 -0.0251     0 A    
   5 psu_2 stratum_1   378  23.0  51.9  0.108      0 B    
   6 psu_2 stratum_1   378  11.0  55.8 -0.485      0 C    
   7 psu_2 stratum_1   378  13.8  64.0 -0.504      0 A    
   8 psu_2 stratum_1   378  14.2  42.7 -1.66       0 B    
   9 psu_3 stratum_1   378  16.5  63.0 -0.382      1 C    
  10 psu_3 stratum_1   378  13.7  53.4 -0.513      1 A    
  # i 40 more rows
  # A tibble: 50 x 8
     psu   strata      fpc    wt    y1      y2    y3 group
     <chr> <chr>     <dbl> <dbl> <dbl>   <dbl> <int> <chr>
   1 psu_1 stratum_1   378  14.3  50.9 -0.122      1 A    
   2 psu_1 stratum_1   378  21.8  20.1  0.188      0 B    
   3 psu_1 stratum_1   378  14.4  52.8  0.119      1 B    
   4 psu_2 stratum_1   378  18.9  46.3 -0.0251     0 A    
   5 psu_2 stratum_1   378  23.0  51.9  0.108      0 B    
   6 psu_2 stratum_1   378  11.0  55.8 -0.485      0 C    
   7 psu_2 stratum_1   378  13.8  64.0 -0.504      0 A    
   8 psu_2 stratum_1   378  14.2  42.7 -1.66       0 B    
   9 psu_3 stratum_1   378  16.5  63.0 -0.382      1 C    
  10 psu_3 stratum_1   378  13.7  53.4 -0.513      1 A    
  # i 40 more rows
  # A tibble: 50 x 8
     psu   strata      fpc    wt    y1      y2    y3 group
     <chr> <chr>     <dbl> <dbl> <dbl>   <dbl> <int> <chr>
   1 psu_1 stratum_1   378  14.3  50.9 -0.122      1 A    
   2 psu_1 stratum_1   378  21.8  20.1  0.188      0 B    
   3 psu_1 stratum_1   378  14.4  52.8  0.119      1 B    
   4 psu_2 stratum_1   378  18.9  46.3 -0.0251     0 A    
   5 psu_2 stratum_1   378  23.0  51.9  0.108      0 B    
   6 psu_2 stratum_1   378  11.0  55.8 -0.485      0 C    
   7 psu_2 stratum_1   378  13.8  64.0 -0.504      0 A    
   8 psu_2 stratum_1   378  14.2  42.7 -1.66       0 B    
   9 psu_3 stratum_1   378  16.5  63.0 -0.382      1 C    
  10 psu_3 stratum_1   378  13.7  53.4 -0.513      1 A    
  # i 40 more rows
  # A tibble: 50 x 8
    psu   strata      fpc    wt    y1     y2    y3 group
    <chr> <chr>     <dbl> <dbl> <dbl>  <dbl> <int> <chr>
  1 psu_1 stratum_1   378  14.3  50.9 -0.122     1 A    
  # i 49 more rows
  # A tibble: 50 x 8
     psu   strata      fpc    wt    y1      y2    y3 group
     <chr> <chr>     <dbl> <dbl> <dbl>   <dbl> <int> <chr>
   1 psu_1 stratum_1   378  14.3  50.9 -0.122      1 A    
   2 psu_1 stratum_1   378  21.8  20.1  0.188      0 B    
   3 psu_1 stratum_1   378  14.4  52.8  0.119      1 B    
   4 psu_2 stratum_1   378  18.9  46.3 -0.0251     0 A    
   5 psu_2 stratum_1   378  23.0  51.9  0.108      0 B    
   6 psu_2 stratum_1   378  11.0  55.8 -0.485      0 C    
   7 psu_2 stratum_1   378  13.8  64.0 -0.504      0 A    
   8 psu_2 stratum_1   378  14.2  42.7 -1.66       0 B    
   9 psu_3 stratum_1   378  16.5  63.0 -0.382      1 C    
  10 psu_3 stratum_1   378  13.7  53.4 -0.513      1 A    
  # i 40 more rows
  # A tibble: 50 x 10
     psu   strata     fpc    wt    y1      y2    y3 group   prob ..surveycore_wt..
     <chr> <chr>    <dbl> <dbl> <dbl>   <dbl> <int> <chr>  <dbl>             <dbl>
   1 psu_1 stratum~   378  14.3  50.9 -0.122      1 A     0.0701              14.3
   2 psu_1 stratum~   378  21.8  20.1  0.188      0 B     0.0459              21.8
   3 psu_1 stratum~   378  14.4  52.8  0.119      1 B     0.0697              14.4
   4 psu_2 stratum~   378  18.9  46.3 -0.0251     0 A     0.0530              18.9
   5 psu_2 stratum~   378  23.0  51.9  0.108      0 B     0.0435              23.0
   6 psu_2 stratum~   378  11.0  55.8 -0.485      0 C     0.0908              11.0
   7 psu_2 stratum~   378  13.8  64.0 -0.504      0 A     0.0727              13.8
   8 psu_2 stratum~   378  14.2  42.7 -1.66       0 B     0.0706              14.2
   9 psu_3 stratum~   378  16.5  63.0 -0.382      1 C     0.0606              16.5
  10 psu_3 stratum~   378  13.7  53.4 -0.513      1 A     0.0728              13.7
  # i 40 more rows
  # A tibble: 30 x 9
     psu   strata      fpc    wt    y1      y2    y3 group ..surveycore_wt..
     <chr> <chr>     <dbl> <dbl> <dbl>   <dbl> <int> <chr>             <int>
   1 psu_1 stratum_1   218  14.3  41.5  1.04       1 B                     1
   2 psu_1 stratum_1   218  21.8  25.9  0.921      1 B                     1
   3 psu_2 stratum_1   218  14.4  50.4  0.721      0 B                     1
   4 psu_2 stratum_1   218  18.9  52.1 -1.04       1 A                     1
   5 psu_2 stratum_1   218  23.0  46.4 -0.0902     0 A                     1
   6 psu_3 stratum_1   218  11.0  57.6  0.624      0 C                     1
   7 psu_3 stratum_1   218  13.7  42.7 -0.954      0 B                     1
   8 psu_4 stratum_1   218  14.2  36.3 -0.543      0 B                     1
   9 psu_4 stratum_1   218  16.5  54.3  0.581      0 C                     1
  10 psu_4 stratum_1   218  13.7  41.9  0.768      0 C                     1
  # i 20 more rows
  # A tibble: 50 x 13
    psu   strata      fpc    wt    y1     y2    y3 group repwt_1 repwt_2 repwt_3
    <chr> <chr>     <dbl> <dbl> <dbl>  <dbl> <int> <chr>   <dbl>   <dbl>   <dbl>
  1 psu_1 stratum_1   378  14.3  50.9 -0.122     1 A        14.4    13.2    13.3
  # i 49 more rows
  # i 2 more variables: repwt_4 <dbl>, repwt_5 <dbl>
  # A tibble: 60 x 11
    psu   strata      fpc    wt    y1    y2    y3 group subset phase1_prob
    <chr> <chr>     <dbl> <dbl> <dbl> <dbl> <int> <chr> <lgl>        <dbl>
  1 psu_1 stratum_1   451  14.3  60.4 -2.02     0 B     TRUE        0.0687
  # i 59 more rows
  # i 1 more variable: phase2_prob <dbl>
  # A tibble: 50 x 13
     psu   strata      fpc    wt    y1      y2    y3 group repwt_1 repwt_2 repwt_3
     <chr> <chr>     <dbl> <dbl> <dbl>   <dbl> <int> <chr>   <dbl>   <dbl>   <dbl>
   1 psu_1 stratum_1   378  14.3  50.9 -0.122      1 A        14.4    13.2   13.3 
   2 psu_1 stratum_1   378  21.8  20.1  0.188      0 B        19.0    22.6   20.3 
   3 psu_1 stratum_1   378  14.4  52.8  0.119      1 B        11.6    12.6   15.2 
   4 psu_2 stratum_1   378  18.9  46.3 -0.0251     0 A        17.5    19.0   19.0 
   5 psu_2 stratum_1   378  23.0  51.9  0.108      0 B        22.9    21.2   24.3 
   6 psu_2 stratum_1   378  11.0  55.8 -0.485      0 C        12.7    13.1    9.77
   7 psu_2 stratum_1   378  13.8  64.0 -0.504      0 A        15.3    12.5   15.1 
   8 psu_2 stratum_1   378  14.2  42.7 -1.66       0 B        14.0    15.2   14.9 
   9 psu_3 stratum_1   378  16.5  63.0 -0.382      1 C        18.0    15.3   15.9 
  10 psu_3 stratum_1   378  13.7  53.4 -0.513      1 A        11.8    13.1   15.8 
  # i 40 more rows
  # i 2 more variables: repwt_4 <dbl>, repwt_5 <dbl>
  # A tibble: 50 x 14
     psu   strata      fpc    wt    y1      y2    y3 group repwt_1 repwt_2 repwt_3
     <chr> <chr>     <dbl> <dbl> <dbl>   <dbl> <int> <chr>   <dbl>   <dbl>   <dbl>
   1 psu_1 stratum_1   378  14.3  50.9 -0.122      1 A        14.4    13.2   13.3 
   2 psu_1 stratum_1   378  21.8  20.1  0.188      0 B        19.0    22.6   20.3 
   3 psu_1 stratum_1   378  14.4  52.8  0.119      1 B        11.6    12.6   15.2 
   4 psu_2 stratum_1   378  18.9  46.3 -0.0251     0 A        17.5    19.0   19.0 
   5 psu_2 stratum_1   378  23.0  51.9  0.108      0 B        22.9    21.2   24.3 
   6 psu_2 stratum_1   378  11.0  55.8 -0.485      0 C        12.7    13.1    9.77
   7 psu_2 stratum_1   378  13.8  64.0 -0.504      0 A        15.3    12.5   15.1 
   8 psu_2 stratum_1   378  14.2  42.7 -1.66       0 B        14.0    15.2   14.9 
   9 psu_3 stratum_1   378  16.5  63.0 -0.382      1 C        18.0    15.3   15.9 
  10 psu_3 stratum_1   378  13.7  53.4 -0.513      1 A        11.8    13.1   15.8 
  # i 40 more rows
  # i 3 more variables: repwt_4 <dbl>, repwt_5 <dbl>, fpc_rep <int>
  # A tibble: 60 x 11
     psu   strata      fpc    wt    y1         y2    y3 group subset phase1_prob
     <chr> <chr>     <dbl> <dbl> <dbl>      <dbl> <int> <chr> <lgl>        <dbl>
   1 psu_1 stratum_1   451  14.3  60.4 -2.02          0 B     TRUE        0.0687
   2 psu_1 stratum_1   451  21.8  59.2 -1.22          0 B     FALSE       0.0687
   3 psu_1 stratum_1   451  14.4  57.2  0.180         1 B     FALSE       0.0687
   4 psu_1 stratum_1   451  18.9  39.6  0.568         1 C     TRUE        0.0687
   5 psu_2 stratum_1   451  23.0  49.1 -0.493         1 A     FALSE       0.0687
   6 psu_2 stratum_1   451  11.0  56.2  0.0000629     0 C     TRUE        0.0687
   7 psu_2 stratum_1   451  13.8  40.5  1.12          0 A     TRUE        0.0687
   8 psu_2 stratum_1   451  14.2  44.6  1.44          0 C     FALSE       0.0687
   9 psu_2 stratum_1   451  16.5  55.8 -1.10          0 A     TRUE        0.0687
  10 psu_2 stratum_1   451  13.7  57.7 -0.117         1 B     TRUE        0.0687
  # i 50 more rows
  # i 1 more variable: phase2_prob <dbl>
  # A tibble: 60 x 11
     psu   strata      fpc    wt    y1         y2    y3 group subset phase1_prob
     <chr> <chr>     <dbl> <dbl> <dbl>      <dbl> <int> <chr> <lgl>        <dbl>
   1 psu_1 stratum_1   451  14.3  60.4 -2.02          0 B     TRUE        0.0687
   2 psu_1 stratum_1   451  21.8  59.2 -1.22          0 B     FALSE       0.0687
   3 psu_1 stratum_1   451  14.4  57.2  0.180         1 B     FALSE       0.0687
   4 psu_1 stratum_1   451  18.9  39.6  0.568         1 C     TRUE        0.0687
   5 psu_2 stratum_1   451  23.0  49.1 -0.493         1 A     FALSE       0.0687
   6 psu_2 stratum_1   451  11.0  56.2  0.0000629     0 C     TRUE        0.0687
   7 psu_2 stratum_1   451  13.8  40.5  1.12          0 A     TRUE        0.0687
   8 psu_2 stratum_1   451  14.2  44.6  1.44          0 C     FALSE       0.0687
   9 psu_2 stratum_1   451  16.5  55.8 -1.10          0 A     TRUE        0.0687
  10 psu_2 stratum_1   451  13.7  57.7 -0.117         1 B     TRUE        0.0687
  # i 50 more rows
  # i 1 more variable: phase2_prob <dbl>
  # A tibble: 30 x 2
           y     w
       <dbl> <dbl>
   1  0.828  2.00 
   2  0.0757 1.11 
   3  0.126  1.85 
   4  2.27   1.22 
   5 -0.838  1.30 
   6 -0.469  1.48 
   7  0.0155 1.20 
   8  0.961  1.41 
   9 -0.281  0.965
  10  0.0697 1.51 
  # i 20 more rows
  # A tibble: 100 x 11
     psu   strata      fpc    wt    y1     y2    y3 group subset phase1_prob
     <chr> <chr>     <dbl> <dbl> <dbl>  <dbl> <int> <chr> <lgl>        <dbl>
   1 psu_1 stratum_1   538 11.6   50.9 -1.43      0 C     FALSE       0.0967
   2 psu_1 stratum_1   538 12.0   46.7 -0.718     0 C     FALSE       0.0967
   3 psu_1 stratum_1   538 12.1   42.0  0.205     1 A     TRUE        0.0967
   4 psu_1 stratum_1   538 11.6   30.8 -1.90      0 A     FALSE       0.0967
   5 psu_1 stratum_1   538  9.12  53.7 -0.449     0 A     FALSE       0.0967
   6 psu_1 stratum_1   538 10.3   56.6  0.523     0 B     TRUE        0.0967
   7 psu_1 stratum_1   538  9.43  69.5 -0.123     0 C     FALSE       0.0967
   8 psu_1 stratum_1   538 10.7   55.8 -1.11      1 B     TRUE        0.0967
   9 psu_1 stratum_1   538 10.5   39.5 -0.774     1 C     FALSE       0.0967
  10 psu_1 stratum_1   538 10.1   39.8  0.615     0 C     FALSE       0.0967
  # i 90 more rows
  # i 1 more variable: phase2_prob <dbl>
  # A tibble: 50 x 8
     psu   strata      fpc    wt    y1      y2    y3 group
     <chr> <chr>     <dbl> <dbl> <dbl>   <dbl> <int> <chr>
   1 psu_1 stratum_1   378  14.3  50.9 -0.122      1 A    
   2 psu_1 stratum_1   378  21.8  20.1  0.188      0 B    
   3 psu_1 stratum_1   378  14.4  52.8  0.119      1 B    
   4 psu_2 stratum_1   378  18.9  46.3 -0.0251     0 A    
   5 psu_2 stratum_1   378  23.0  51.9  0.108      0 B    
   6 psu_2 stratum_1   378  11.0  55.8 -0.485      0 C    
   7 psu_2 stratum_1   378  13.8  64.0 -0.504      0 A    
   8 psu_2 stratum_1   378  14.2  42.7 -1.66       0 B    
   9 psu_3 stratum_1   378  16.5  63.0 -0.382      1 C    
  10 psu_3 stratum_1   378  13.7  53.4 -0.513      1 A    
  # i 40 more rows
  # A tibble: 10 x 6
         y    wt    r1    r2    r3    r4
     <int> <dbl> <dbl> <dbl> <dbl> <dbl>
   1     1     1     1     1     1     1
   2     2     1     1     1     1     1
   3     3     1     1     1     1     1
   4     4     1     1     1     1     1
   5     5     1     1     1     1     1
   6     6     1     1     1     1     1
   7     7     1     1     1     1     1
   8     8     1     1     1     1     1
   9     9     1     1     1     1     1
  10    10     1     1     1     1     1
  # A tibble: 10 x 6
         y    wt    r1    r2    r3    r4
     <int> <dbl> <dbl> <dbl> <dbl> <dbl>
   1     1     1     1     1     1     1
   2     2     1     1     1     1     1
   3     3     1     1     1     1     1
   4     4     1     1     1     1     1
   5     5     1     1     1     1     1
   6     6     1     1     1     1     1
   7     7     1     1     1     1     1
   8     8     1     1     1     1     1
   9     9     1     1     1     1     1
  10    10     1     1     1     1     1
  # A tibble: 10 x 6
         y    wt    r1    r2    r3    r4
     <int> <dbl> <dbl> <dbl> <dbl> <dbl>
   1     1     1     1     1     1     1
   2     2     1     1     1     1     1
   3     3     1     1     1     1     1
   4     4     1     1     1     1     1
   5     5     1     1     1     1     1
   6     6     1     1     1     1     1
   7     7     1     1     1     1     1
   8     8     1     1     1     1     1
   9     9     1     1     1     1     1
  10    10     1     1     1     1     1
  # A tibble: 10 x 6
         y    wt    r1    r2    r3    r4
     <int> <dbl> <dbl> <dbl> <dbl> <dbl>
   1     1     1     1     1     1     1
   2     2     1     1     1     1     1
   3     3     1     1     1     1     1
   4     4     1     1     1     1     1
   5     5     1     1     1     1     1
   6     6     1     1     1     1     1
   7     7     1     1     1     1     1
   8     8     1     1     1     1     1
   9     9     1     1     1     1     1
  10    10     1     1     1     1     1
  # A tibble: 10 x 2
         y    wt
     <int> <dbl>
   1     1     1
   2     2     1
   3     3     1
   4     4     1
   5     5     1
   6     6     1
   7     7     1
   8     8     1
   9     9     1
  10    10     1
  
  -- Survey Design ---------------------------------------------------------------
  <survey_nonprob> (non-probability, JK1, 4 replicates) [experimental]
  Sample size: 10
  
  # A tibble: 10 x 6
         y    wt    r1    r2    r3    r4
     <int> <dbl> <dbl> <dbl> <dbl> <dbl>
   1     1     1     1     1     1     1
   2     2     1     1     1     1     1
   3     3     1     1     1     1     1
   4     4     1     1     1     1     1
   5     5     1     1     1     1     1
   6     6     1     1     1     1     1
   7     7     1     1     1     1     1
   8     8     1     1     1     1     1
   9     9     1     1     1     1     1
  10    10     1     1     1     1     1
  i Skipped 2 surveys missing the requested variable: "w1" and "w2".
  i Skipped 1 survey missing the requested variable: "only".
  [ FAIL 6 | WARN 340 | SKIP 622 | PASS 12360 ]
  
  ══ Skipped tests (622) ═════════════════════════════════════════════════════════
  • A-13 trigger requires careful numerical construction; tracked for follow-up
    PR (1): 'test-glm-anova.R:531:3'
  • A-20 requires a hand-built fit whose @design@data domain column differs from
    the refit's; deferred to follow-up PR (1): 'test-glm-anova.R:481:3'
  • On CRAN (585): 'test-analysis-corr-latent-primitives.R:74:1',
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    'test-glm.R:1007:1', 'test-glm.R:1015:1', 'test-glm.R:1288:1',
    'test-labelled-storage.R:492:1', 'test-labelled-storage.R:507:1',
    'test-labelled-storage.R:522:1', 'test-labelled-storage.R:539:1',
    'test-labelled-storage.R:610:1', 'test-labelled-storage.R:637:1',
    'test-labelled-storage.R:687:1', 'test-labelled-storage.R:753:1',
    'test-metadata-infer.R:408:1', 'test-metadata-system.R:188:1',
    'test-metadata-system.R:872:1', 'test-metadata-system.R:876:1',
    'test-metadata-system.R:884:1', 'test-metadata-system.R:889:1',
    'test-metadata-system.R:897:1', 'test-metadata-system.R:902:1',
    'test-metadata-system.R:907:1', 'test-metadata-system.R:912:1',
    'test-metadata-system.R:1088:1', 'test-metadata-system.R:1093:1',
    'test-metadata-system.R:1098:1', 'test-metadata-system.R:1102:1',
    'test-metadata-system.R:1107:1', 'test-metadata-system.R:1115:1',
    'test-metadata-system.R:1123:1', 'test-metadata-system.R:1128:1',
    'test-metadata-system.R:1270:1', 'test-metadata-system.R:1277:1',
    'test-metadata-system.R:1282:1', 'test-metadata-system.R:1290:1',
    'test-metadata-system.R:1295:1', 'test-metadata-system.R:1303:1',
    'test-metadata-system.R:1308:1', 'test-metadata-system.R:1441:1',
    'test-metadata-system.R:1445:1', 'test-metadata-system.R:1453:1',
    'test-metadata-system.R:1458:1', 'test-metadata-system.R:1466:1',
    'test-metadata-system.R:1471:1', 'test-metadata-system.R:1476:1',
    'test-metadata-system.R:1602:1', 'test-metadata-system.R:1606:1',
    'test-metadata-system.R:1611:1', 'test-metadata-system.R:1619:1',
    'test-metadata-system.R:1624:1', 'test-metadata-system.R:1632:1',
    'test-metadata-system.R:1637:1', 'test-metadata-system.R:1786:1',
    'test-metadata-system.R:1791:1', 'test-metadata-system.R:1798:1',
    'test-metadata-system.R:1806:1', 'test-metadata-system.R:1811:1',
    'test-metadata-system.R:1823:1', 'test-metadata-system.R:1828:1',
    'test-metadata-system.R:2203:1', 'test-metadata-system.R:2210:1',
    'test-metadata-system.R:2218:1', 'test-metadata-system.R:2223:1',
    'test-metadata-system.R:2231:1', 'test-metadata-system.R:2236:1',
    'test-metadata-system.R:2241:1', 'test-metadata-system.R:2249:1',
    'test-metadata-system.R:2254:1', 'test-metadata-system.R:2531:1',
    'test-metadata-system.R:2684:1', 'test-metadata-system.R:2698:1',
    'test-metadata-system.R:2712:1', 'test-metadata-system.R:2726:1',
    'test-metadata-system.R:2846:1', 'test-metadata-system.R:3133:1',
    'test-metadata-system.R:3137:1', 'test-metadata-system.R:3317:1',
    'test-metadata-system.R:3325:1', 'test-metadata-system.R:3343:1',
    'test-metadata-system.R:3358:1', 'test-metadata-system.R:3373:1',
    'test-metadata-system.R:3553:1', 'test-metadata-system.R:3561:1',
    'test-metadata-system.R:3576:1', 'test-metadata-system.R:3591:1',
    'test-metadata-system.R:3774:1', 'test-metadata-system.R:3782:1',
    'test-metadata-system.R:3790:1', 'test-metadata-system.R:3805:1',
    'test-metadata-system.R:3823:1', 'test-metadata-system.R:3841:1',
    'test-metadata-system.R:3859:1', 'test-metadata-system.R:3874:1',
    'test-metadata-system.R:4051:1', 'test-metadata-system.R:4059:1',
    'test-metadata-system.R:4067:1', 'test-metadata-system.R:4085:1',
    'test-metadata-system.R:4103:1', 'test-metadata-system.R:4121:1',
    'test-metadata-system.R:4136:1', 'test-metadata-system.R:4201:1',
    'test-metadata-system.R:4212:1', 'test-metadata-system.R:4361:1',
    'test-methods-compat.R:249:1', 'test-methods-compat.R:264:1',
    'test-methods-compat.R:274:1', 'test-methods-print.R:107:1',
    'test-methods-print.R:118:1', 'test-methods-print.R:216:1',
    'test-methods-print.R:226:1', 'test-methods-print.R:244:1',
    'test-methods-print.R:254:1', 'test-methods-print.R:272:1',
    'test-methods-print.R:313:1', 'test-methods-print.R:328:1',
    'test-methods-print.R:353:1', 'test-methods-print.R:363:1',
    'test-methods-print.R:374:1', 'test-methods-print.R:385:1',
    'test-methods-print.R:395:1', 'test-methods-print.R:405:1',
    'test-methods-print.R:420:1', 'test-methods-print.R:434:1',
    'test-methods-print.R:502:1', 'test-methods-print.R:513:1',
    'test-methods-print.R:554:1', 'test-methods-print.R:562:1',
    'test-methods-print.R:723:1', 'test-methods-print.R:749:1',
    'test-methods-print.R:771:1', 'test-methods-print.R:792:1',
    'test-methods-print.R:805:1', 'test-methods-print.R:818:1',
    'test-methods-print.R:825:1', 'test-methods-print.R:931:1',
    'test-methods-print.R:943:1', 'test-methods-print.R:956:1',
    'test-methods-print.R:969:1', 'test-methods-print.R:1029:1',
    'test-methods-print.R:1041:1', 'test-methods-print.R:1054:1',
    'test-methods-print.R:1067:1', 'test-methods-print.R:1779:1',
    'test-methods-print.R:1788:1', 'test-methods-print.R:1794:1',
    'test-methods-print.R:1801:1', 'test-methods-print.R:1807:1',
    'test-methods-print.R:1813:1', 'test-methods-print.R:1819:1',
    'test-methods-print.R:1825:1', 'test-methods-print.R:1866:1',
    'test-methods-print.R:1873:1', 'test-methods-print.R:1887:1',
    'test-methods-print.R:2038:1', 'test-methods-print.R:2052:1',
    'test-methods-print.R:2065:1', 'test-methods-print.R:2080:1',
    'test-methods-print.R:2187:1', 'test-nonprob-bootstrap-variance.R:618:1',
    'test-sata-detection.R:178:1', 'test-sata-detection.R:193:1',
    'test-sata-detection.R:211:1', 'test-survey-collection-dispatch.R:319:1',
    'test-survey-collection-dispatch.R:343:1',
    'test-survey-collection-dispatch.R:366:1',
    'test-survey-collection-dispatch.R:379:1',
    'test-survey-collection-dispatch.R:389:1',
    'test-survey-collection-dispatch.R:399:1',
    'test-survey-collection-dispatch.R:447:1',
    'test-survey-collection-dispatch.R:560:1',
    'test-survey-collection-dispatch.R:820:1', 'test-survey-collection.R:187:1',
    'test-survey-collection.R:236:1', 'test-survey-collection.R:381:1',
    'test-survey-collection.R:455:1', 'test-survey-collection.R:714:1',
    'test-survey-collection.R:742:1', 'test-survey-collection.R:1008:1',
    'test-survey-collection.R:1014:1', 'test-survey-collection.R:1025:1',
    'test-update-design.R:146:1', 'test-update-design.R:395:1',
    'test-utils.R:632:1', 'test-utils.R:1049:1', 'test-utils.R:1075:1',
    'test-validators.R:354:1', 'test-validators.R:376:1',
    'test-validators.R:398:1', 'test-variance-taylor.R:308:1',
    'test-variance-twophase.R:4:1', 'test-variance-vendored-saddlepoint.R:9:1'
  • R/ source tree not available (installed-package test layout) (1):
    'test-metadata-system.R:2946:5'
  • Set SURVEYCORE_EXTENDED_TESTS=true to run extended tests (1):
    'test-edge-conditions.R:240:3'
  • {surveytidy} is not installed (33): 'test-analysis-corr.R:153:3',
    'test-analysis-corr.R:237:3', 'test-analysis-corr.R:265:3',
    'test-analysis-corr.R:320:3', 'test-analysis-corr.R:344:3',
    'test-analysis-corr.R:373:3', 'test-analysis-corr.R:394:3',
    'test-analysis-corr.R:1214:3', 'test-analysis-corr.R:1223:3',
    'test-analysis-diffs.R:641:3', 'test-analysis-freqs.R:1562:3',
    'test-analysis-freqs.R:1571:3', 'test-analysis-means.R:795:3',
    'test-analysis-means.R:804:3', 'test-analysis-quantiles.R:1227:3',
    'test-analysis-quantiles.R:1236:3', 'test-analysis-ratios.R:384:3',
    'test-analysis-ratios.R:416:3', 'test-analysis-ratios.R:1023:3',
    'test-analysis-ratios.R:1032:3', 'test-analysis-totals.R:607:3',
    'test-analysis-totals.R:616:3', 'test-analysis-variance.R:259:3',
    'test-conversion.R:3793:3', 'test-conversion.R:4255:3',
    'test-effective-n.R:278:3', 'test-glm.R:387:3',
    'test-methods-compat.R:363:3', 'test-methods-compat.R:376:3',
    'test-methods-compat.R:395:3', 'test-methods-compat.R:409:3',
    'test-variance-taylor.R:1531:5', 'test-variance-taylor.R:1583:5'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-labelled-analysis.R:264:3'): A-23: get_diffs() with a plain treatment column matches ──
  Expected `r$labelled` to be identical to `r$plain`.
  Differences:
    `actual$estimate`: 0.000000000000000000 -0.025512738663910791
  `expected$estimate`: 0.000000000000000000 -0.025512738663910774
  
    `actual$ci_low`: NA -0.108990834757776808
  `expected$ci_low`: NA -0.108990834757776822
  
    `actual$ci_high`: NA 0.057965357429955219
  `expected$ci_high`: NA 0.057965357429955282
  
    `actual$p_value`: NA 0.52765933935408960
  `expected$p_value`: NA 0.52765933935409004
  
  ── Failure ('test-labelled-analysis.R:278:3'): A-24: get_diffs() with a labelled treatment column matches ──
  Expected `labelled` to be identical to `plain`.
  Differences:
    `actual$estimate`: 0.000000000000000000 -0.025512738663910774
  `expected$estimate`: 0.000000000000000000 -0.025512738663910791
  
    `actual$ci_low`: NA -0.108990834757776822
  `expected$ci_low`: NA -0.108990834757776808
  
    `actual$ci_high`: NA 0.057965357429955282
  `expected$ci_high`: NA 0.057965357429955219
  
    `actual$p_value`: NA 0.52765933935409004
  `expected$p_value`: NA 0.52765933935408960
  
  ── Failure ('test-labelled-analysis.R:288:3'): A-26: get_anova() from a formula matches plain input ──
  Expected `r$labelled` to equal `r$plain`.
  Differences:
  attr(actual, '.meta')$terms[[1]]$lambda != attr(expected, '.meta')$terms[[1]]$lambda but don't know how to show the difference
  
  actual$deff != expected$deff but don't know how to show the difference
  
  actual$p_value != expected$p_value but don't know how to show the difference
  
  ── Failure ('test-labelled-analysis.R:295:3'): A-27: survey_glm() on labelled columns matches plain input ──
  Expected `r$labelled` to equal `r$plain`.
  Differences:
  actual@coefficients != expected@coefficients but don't know how to show the difference
  
  actual@vcov != expected@vcov but don't know how to show the difference
  
  actual@fit_$coefficients != expected@fit_$coefficients but don't know how to show the difference
  
  actual@fit_$effects != expected@fit_$effects but don't know how to show the difference
  
  actual@fit_$R != expected@fit_$R but don't know how to show the difference
  
  actual@fit_$qr$qr != expected@fit_$qr$qr but don't know how to show the difference
  
  ── Failure ('test-labelled-analysis.R:300:3'): A-28: get_anova() on a fitted model matches plain input ──
  Expected `r$labelled` to equal `r$plain`.
  Differences:
  attr(actual, '.meta')$terms[[1]]$lambda != attr(expected, '.meta')$terms[[1]]$lambda but don't know how to show the difference
  
  actual$deff != expected$deff but don't know how to show the difference
  
  actual$p_value != expected$p_value but don't know how to show the difference
  
  ── Failure ('test-labelled-analysis.R:488:3'): X-3: clean() on a fit with a labelled predictor matches plain ──
  Expected `r$labelled` to be identical to `r$plain`.
  Differences:
    `actual$estimate`: 24.885922964500743149 -0.077271326175256741
  `expected$estimate`: 24.885922964500743149 -0.077271326175256685
  
    `actual$std_error`: 0.50696009953130194 1.00355596341055753
  `expected$std_error`: 0.50696009953130183 1.00355596341055708
  
    `actual$statistic`: 49.088523904560609878 -0.076997525790841057
  `expected$statistic`: 49.088523904560624089 -0.076997525790841029
  
  actual$p_value vs expected$p_value
  - 0.00000000000000000009287582418796388
  + 0.00000000000000000009287582418796322
    0.93952447002580852242203945934306830
  
    `actual$conf_low`: 23.81633064916967513 -2.19458933100637266
  `expected$conf_low`: 23.81633064916967513 -2.19458933100637177
  
    `actual$conf_high`: 25.95551527983181117 2.04004667865585931
  `expected$conf_high`: 25.95551527983181117 2.04004667865585843
  
  
  [ FAIL 6 | WARN 340 | SKIP 622 | PASS 12360 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [24s/24s] OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/localhost/ripley/R/packages/tests-MKL/surveycore.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 6:02.28, 348.02 + 11.96