* using log directory ‘/data/localhost/ripley/R/packages/tests-MKL/specr.Rcheck’ * using R Under development (unstable) (2026-10-30 r90795) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2) GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2) * running under: Fedora Linux 44 (Server Edition) * using session charset: UTF-8 * current time: 2026-10-30 09:53:12 UTC * using option ‘--no-stop-on-test-error’ * checking for file ‘specr/DESCRIPTION’ ... OK * this is package ‘specr’ version ‘1.1.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘specr’ can be installed ... [11s/12s] OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [15s/16s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [33s/34s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [33s/35s] [33s/35s] ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(specr) Attaching package: 'specr' The following object is masked from 'package:testthat': setup > > test_check("specr") Number of specifications: 32 Models fitted based on 32 specifications Number of cores used: 1 Descriptive summary of the specification curve: median mad min max q25 q75 0.44 0.26 0.16 0.66 0.23 0.6 boundary (singular) fit: see help('isSingular') boundary (singular) fit: see help('isSingular') Saving _problems/test-infer_curve-22.R Saving _problems/test-infer_curve-131.R [ FAIL 2 | WARN 0 | SKIP 4 | PASS 272 ] ══ Skipped tests (4) ═══════════════════════════════════════════════════════════ • On CRAN (4): 'test-infer_curve.R:136:3', 'test-infer_curve.R:224:3', 'test-specr.R:60:3', 'test-specr.R:174:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-infer_curve.R:22:3'): data can be passed as setup object or data frame ── Expected `a$estimates` to be identical to `b$estimates`. Differences: actual | expected [3] 0.0399892604561425807 | 0.0399892604561425807 [3] [4] 0.0164851159804609189 | 0.0164851159804609189 [4] [5] -0.0821033582248115595 | -0.0821033582248115595 [5] [6] 0.0360852634132146771 - 0.0360852634132146910 [6] [7] -0.0454245387115369062 | -0.0454245387115369062 [7] [8] 0.0446342231301442502 - 0.0446342231301442433 [8] [9] 0.0316546908415489756 | 0.0316546908415489756 [9] [10] -0.0802694748269302261 | -0.0802694748269302261 [10] [11] 0.0279234977122282818 | 0.0279234977122282818 [11] [12] -0.0474661815271363655 - -0.0474661815271363724 [12] ... ... ... and 36 more ... actual | expected [52] -0.0122646061509882106 | -0.0122646061509882106 [52] [53] 0.0158252324384242048 | 0.0158252324384242048 [53] [54] -0.0149301143555436115 | -0.0149301143555436115 [54] [55] -0.0421418478235002017 - -0.0421418478235002156 [55] [56] 0.0140210193763397259 | 0.0140210193763397259 [56] [57] -0.0118788134280055774 | -0.0118788134280055774 [57] [58] 0.0205389685447832926 | 0.0205389685447832926 [58] [59] -0.0070440388578304281 | -0.0070440388578304281 [59] [60] -0.0367895891263042563 - -0.0367895891263042701 [60] [61] -0.0975506307188750005 | -0.0975506307188750005 [61] ... ... ... and 13 more ... ── Failure ('test-infer_curve.R:131:3'): results are reproducible with set.seed() ── Expected `a$estimates` to be identical to `b$estimates`. Differences: actual | expected [1] -0.119507771038296004 | -0.119507771038296004 [1] [2] -0.088900436934750582 | -0.088900436934750582 [2] [3] -0.031238688098581307 - -0.031238688098581293 [3] [4] -0.025345625227669012 | -0.025345625227669012 [4] [5] -0.068831613672010211 | -0.068831613672010211 [5] [6] -0.029517994602250033 | -0.029517994602250033 [6] actual | expected [14] -0.033582576554099811 | -0.033582576554099811 [14] [15] -0.076153681054923011 | -0.076153681054923011 [15] [16] -0.017785312615897084 | -0.017785312615897084 [16] [17] -0.028462134474207361 - -0.028462134474207378 [17] [18] -0.047658189756776555 | -0.047658189756776555 [18] [19] -0.025838941674972384 - -0.025838941674972370 [19] [20] -0.012734936002973261 | -0.012734936002973261 [20] [21] -0.122053714843817732 | -0.122053714843817732 [21] [22] -0.098866483349404483 | -0.098866483349404483 [22] actual | expected [50] -0.056268901222150919 | -0.056268901222150919 [50] [51] 0.086330123534761188 | 0.086330123534761188 [51] [52] 0.054440581963185658 | 0.054440581963185658 [52] [53] 0.026736335327649952 - 0.026736335327649966 [53] [54] 0.024303130861587117 | 0.024303130861587117 [54] [55] 0.016842564452996311 | 0.016842564452996311 [55] [56] -0.013836746787666263 | -0.013836746787666263 [56] actual | expected [62] 0.085055705997568190 | 0.085055705997568190 [62] [63] -0.030288117011500432 | -0.030288117011500432 [63] [64] 0.026076790358349949 | 0.026076790358349949 [64] [65] -0.022427176292456368 - -0.022427176292456389 [65] [66] -0.012450123231051494 | -0.012450123231051494 [66] [67] 0.048289859913955034 | 0.048289859913955034 [67] [68] -0.010152554305244751 | -0.010152554305244751 [68] actual | expected [105] -0.031300682572411309 | -0.031300682572411309 [105] [106] -0.038078652255193211 | -0.038078652255193211 [106] [107] -0.004253772218998343 | -0.004253772218998343 [107] [108] -0.026720991873115042 - -0.026720991873115031 [108] [109] 0.040482652451344296 | 0.040482652451344296 [109] [110] -0.001768981347196684 | -0.001768981347196684 [110] [111] -0.070149126091654204 | -0.070149126091654204 [111] actual | expected [148] -0.021645723548769591 | -0.021645723548769591 [148] [149] 0.083914303543352206 | 0.083914303543352206 [149] [150] 0.006918101784449912 | 0.006918101784449912 [150] [151] 0.000961839467627007 - 0.000961839467626992 [151] [152] 0.078903609259772425 | 0.078903609259772425 [152] [153] -0.006083139452820288 | -0.006083139452820288 [153] [154] 0.003296274913804716 - 0.003296274913804652 [154] [155] 0.027028627296872800 | 0.027028627296872800 [155] [156] 0.002892174914693771 | 0.002892174914693771 [156] [157] 0.039482679722329571 | 0.039482679722329571 [157] [ FAIL 2 | WARN 0 | SKIP 4 | PASS 272 ] Error: ! Test failures. Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [115s/122s] OK * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/data/localhost/ripley/R/packages/tests-MKL/specr.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 4:48.19, 251.46 + 17.37