* using log directory ‘/data/gannet/ripley/R/packages/tests-MKL/simstudy.Rcheck’
* using R Under development (unstable) (2025-12-01 r89083)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
    GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
* running under: Fedora Linux 42 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘simstudy/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘simstudy’ version ‘0.9.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘simstudy’ can be installed ... [33s/44s] OK
* used C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [26s/32s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [19s/24s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [28s/36s]
 [29s/36s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(hedgehog)
  > library(simstudy)
  > 
  > data.table::setDTthreads(2) # added to solve CRAN issue
  > test_check("simstudy")
  Saving _problems/test-generate_correlated_data-414.R
  [ FAIL 1 | WARN 0 | SKIP 307 | PASS 214 ]
  
  ══ Skipped tests (307) ═════════════════════════════════════════════════════════
  • On CRAN (307): 'test-actual-distributions.R:6:3',
    'test-actual-distributions.R:28:3', 'test-add_data.R:7:3',
    'test-add_data.R:14:3', 'test-add_data.R:29:3', 'test-add_data.R:36:3',
    'test-add_data.R:45:3', 'test-add_data.R:59:3', 'test-add_data.R:73:3',
    'test-add_data.R:106:3', 'test-add_data.R:149:3', 'test-add_data.R:181:3',
    'test-add_data.R:224:3', 'test-add_data.R:245:3', 'test-add_data.R:267:3',
    'test-add_data.R:285:3', 'test-add_data.R:299:3', 'test-add_data.R:313:3',
    'test-add_data.R:326:3', 'test-add_data.R:346:3', 'test-add_data.R:374:3',
    'test-add_data.R:391:3', 'test-add_data.R:411:3', 'test-asserts.R:7:3',
    'test-asserts.R:18:3', 'test-asserts.R:25:3', 'test-asserts.R:34:3',
    'test-asserts.R:44:3', 'test-asserts.R:55:3', 'test-asserts.R:62:3',
    'test-asserts.R:69:3', 'test-asserts.R:76:3', 'test-asserts.R:83:3',
    'test-asserts.R:90:3', 'test-asserts.R:99:3', 'test-asserts.R:108:3',
    'test-asserts.R:117:3', 'test-asserts.R:126:3', 'test-asserts.R:137:3',
    'test-asserts.R:144:3', 'test-asserts.R:158:3', 'test-asserts.R:174:3',
    'test-asserts.R:188:3', 'test-asserts.R:206:3', 'test-asserts.R:224:3',
    'test-asserts.R:235:3', 'test-asserts.R:246:3', 'test-asserts.R:257:3',
    'test-asserts.R:268:3', 'test-asserts.R:277:3', 'test-asserts.R:285:3',
    'test-asserts.R:297:3', 'test-asserts.R:307:3', 'test-asserts.R:326:3',
    'test-asserts.R:334:3', 'test-conditions.R:6:3', 'test-conditions.R:19:3',
    'test-define_data.R:12:3', 'test-define_data.R:24:3',
    'test-define_data.R:36:3', 'test-define_data.R:48:3',
    'test-define_data.R:60:3', 'test-define_data.R:72:3',
    'test-define_data.R:84:3', 'test-define_data.R:95:3',
    'test-define_data.R:106:3', 'test-define_data.R:117:3',
    'test-define_data.R:131:3', 'test-define_data.R:146:3',
    'test-define_data.R:161:3', 'test-define_data.R:174:3',
    'test-define_data.R:187:3', 'test-define_data.R:200:3',
    'test-define_data.R:214:3', 'test-define_data.R:229:3',
    'test-define_data.R:244:3', 'test-define_data.R:261:3',
    'test-define_data.R:269:3', 'test-define_data.R:280:3',
    'test-define_data.R:297:3', 'test-define_data.R:305:3',
    'test-define_data.R:313:3', 'test-define_data.R:338:3',
    'test-define_data.R:348:3', 'test-define_data.R:366:3',
    'test-define_data.R:381:3', 'test-define_data.R:394:3',
    'test-define_data.R:412:3', 'test-define_data.R:434:3',
    'test-define_data.R:441:3', 'test-define_data.R:456:3',
    'test-define_data.R:471:3', 'test-define_data.R:493:3',
    'test-define_data.R:515:3', 'test-define_data.R:544:3',
    'test-define_data.R:558:3', 'test-define_data.R:576:3',
    'test-define_data.R:597:3', 'test-define_data.R:619:3',
    'test-define_data.R:648:3', 'test-define_data.R:662:3',
    'test-define_data.R:673:3', 'test-define_data.R:695:3',
    'test-define_data.R:713:3', 'test-define_data.R:731:3',
    'test-define_data.R:747:3', 'test-define_data.R:758:3',
    'test-define_data.R:767:3', 'test-define_data.R:779:3',
    'test-define_data.R:799:3', 'test-define_data.R:817:3',
    'test-define_data.R:833:3', 'test-define_data.R:845:3',
    'test-define_data.R:860:3', 'test-define_data.R:872:3',
    'test-define_data.R:885:3', 'test-define_data.R:899:3',
    'test-define_data.R:907:3', 'test-define_data.R:921:3',
    'test-define_data.R:931:3', 'test-define_data.R:942:3',
    'test-define_data.R:950:3', 'test-define_data.R:978:3',
    'test-define_data.R:993:3', 'test-define_data.R:1005:3',
    'test-define_data.R:1029:3', 'test-define_data.R:1053:3',
    'test-define_data.R:1060:3', 'test-define_data.R:1075:3',
    'test-define_data.R:1087:3', 'test-generate_correlated_data.R:8:3',
    'test-generate_correlated_data.R:24:3',
    'test-generate_correlated_data.R:63:3',
    'test-generate_correlated_data.R:100:3',
    'test-generate_correlated_data.R:121:3',
    'test-generate_correlated_data.R:151:3',
    'test-generate_correlated_data.R:211:3',
    'test-generate_correlated_data.R:230:3',
    'test-generate_correlated_data.R:255:3',
    'test-generate_correlated_data.R:332:3',
    'test-generate_correlated_data.R:352:3',
    'test-generate_correlated_data.R:419:3',
    'test-generate_correlated_data.R:1532:3',
    'test-generate_correlated_data.R:1594:3',
    'test-generate_correlated_data.R:1644:3',
    'test-generate_correlated_data.R:1681:3', 'test-generate_data.R:7:3',
    'test-generate_data.R:38:3', 'test-generate_data.R:52:3',
    'test-generate_data.R:119:3', 'test-generate_data.R:169:3',
    'test-generate_data.R:227:3', 'test-generate_data.R:233:3',
    'test-generate_data.R:251:3', 'test-generate_data.R:280:3',
    'test-generate_data.R:306:3', 'test-generate_data.R:343:3',
    'test-generate_data.R:400:3', 'test-generate_data.R:415:3',
    'test-generate_data.R:434:3', 'test-generate_data.R:465:3',
    'test-generate_data.R:554:3', 'test-generate_data.R:572:3',
    'test-generate_data.R:673:3', 'test-generate_data.R:702:3',
    'test-generate_data.R:734:3', 'test-generate_data.R:757:3',
    'test-generate_data.R:784:3', 'test-generate_data.R:813:3',
    'test-generate_data.R:847:3', 'test-generate_data.R:897:3',
    'test-generate_data.R:987:3', 'test-generate_data.R:1040:3',
    'test-generate_dist.R:7:3', 'test-generate_dist.R:32:3',
    'test-generate_dist.R:57:3', 'test-generate_dist.R:71:3',
    'test-generate_dist.R:97:3', 'test-generate_dist.R:111:3',
    'test-generate_dist.R:129:3', 'test-generate_dist.R:144:3',
    'test-generate_dist.R:149:3', 'test-generate_dist.R:162:3',
    'test-generate_dist.R:182:3', 'test-generate_dist.R:211:3',
    'test-generate_dist.R:233:3', 'test-generate_dist.R:279:3',
    'test-generate_dist.R:321:3', 'test-generate_dist.R:367:3',
    'test-generate_dist.R:404:3', 'test-generate_dist.R:421:3',
    'test-generate_dist.R:436:3', 'test-generate_dist.R:451:3',
    'test-generate_dist.R:473:3', 'test-generate_dist.R:495:3',
    'test-generate_dist.R:539:3', 'test-generate_dist.R:561:3',
    'test-generate_dist.R:587:3', 'test-generate_dist.R:625:3',
    'test-generate_dist.R:659:3', 'test-generate_dist.R:693:3',
    'test-generate_dist.R:723:3', 'test-generate_dist.R:765:3',
    'test-generate_dist.R:791:3', 'test-generate_dist.R:806:3',
    'test-generate_dist.R:821:3', 'test-glue.R:8:3', 'test-glue.R:24:3',
    'test-glue.R:33:3', 'test-group_data.R:7:3', 'test-group_data.R:73:3',
    'test-group_data.R:88:3', 'test-group_data.R:106:3',
    'test-group_data.R:117:3', 'test-group_data.R:129:3',
    'test-group_data.R:142:3', 'test-group_data.R:156:3',
    'test-group_data.R:170:3', 'test-group_data.R:182:3',
    'test-group_data.R:194:3', 'test-group_data.R:206:3',
    'test-group_data.R:221:3', 'test-group_data.R:238:3',
    'test-group_data.R:258:3', 'test-group_data.R:290:3',
    'test-group_data.R:313:3', 'test-group_data.R:337:3',
    'test-group_data.R:360:3', 'test-group_data.R:368:3',
    'test-group_data.R:387:3', 'test-group_data.R:406:3',
    'test-group_data.R:425:3', 'test-group_data.R:459:3',
    'test-group_data.R:485:3', 'test-group_data.R:511:3',
    'test-group_data.R:557:3', 'test-group_data.R:590:3',
    'test-group_data.R:603:3', 'test-group_data.R:617:3',
    'test-group_data.R:632:3', 'test-group_data.R:642:3',
    'test-group_data.R:658:3', 'test-group_data.R:673:3',
    'test-group_data.R:682:3', 'test-group_data.R:691:3',
    'test-group_data.R:703:3', 'test-group_data.R:714:3',
    'test-group_data.R:727:3', 'test-group_data.R:744:3',
    'test-group_data.R:764:3', 'test-group_data.R:777:3',
    'test-group_data.R:785:3', 'test-group_data.R:796:3',
    'test-internal_utility.R:7:3', 'test-internal_utility.R:20:3',
    'test-internal_utility.R:36:3', 'test-internal_utility.R:45:3',
    'test-internal_utility.R:54:3', 'test-internal_utility.R:66:3',
    'test-internal_utility.R:86:3', 'test-internal_utility.R:92:3',
    'test-internal_utility.R:103:3', 'test-internal_utility.R:118:3',
    'test-internal_utility.R:130:3', 'test-internal_utility.R:142:3',
    'test-internal_utility.R:153:3', 'test-internal_utility.R:195:3',
    'test-missing_data.R:192:3', 'test-missing_data.R:250:3',
    'test-survival.R:8:3', 'test-survival.R:35:3', 'test-survival.R:48:3',
    'test-survival.R:72:3', 'test-survival.R:91:3', 'test-survival.R:102:3',
    'test-utility.R:11:3', 'test-utility.R:21:3', 'test-utility.R:46:3',
    'test-utility.R:62:3', 'test-utility.R:72:3', 'test-utility.R:78:3',
    'test-utility.R:84:3', 'test-utility.R:94:3', 'test-utility.R:106:3',
    'test-utility.R:120:3', 'test-utility.R:130:3', 'test-utility.R:137:3',
    'test-utility.R:155:3', 'test-utility.R:229:3', 'test-utility.R:256:3',
    'test-utility.R:263:3', 'test-utility.R:269:3', 'test-utility.R:292:3',
    'test-utility.R:298:3', 'test-utility.R:307:3', 'test-utility.R:366:3',
    'test-utility.R:375:3', 'test-utility.R:383:3', 'test-utility.R:392:3',
    'test-utility.R:401:3', 'test-utility.R:410:3', 'test-utility.R:420:3',
    'test-utility.R:426:3', 'test-utility.R:432:3', 'test-utility.R:438:3',
    'test-utility.R:444:3', 'test-utility.R:450:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-generate_correlated_data.R:411:3'): addCorData emits warning if `idname` appears multiple times ──
  Error in `.buildCorMat(nvars, corMatrix, corstr, rho)`: Correlation matrix not symmetric
  Backtrace:
      ▆
   1. ├─testthat::expect_warning(...) at test-generate_correlated_data.R:411:3
   2. │ └─testthat:::quasi_capture(...)
   3. │   ├─testthat (local) .capture(...)
   4. │   │ └─base::withCallingHandlers(...)
   5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
   6. └─simstudy::addCorData(dt, "id", mu = mu, sigma = sigma, corMat = corMat)
   7.   └─simstudy::genCorData(...)
   8.     └─simstudy:::.buildCorMat(nvars, corMatrix, corstr, rho)
  
  [ FAIL 1 | WARN 0 | SKIP 307 | PASS 214 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [385s/506s] OK
* checking PDF version of manual ... [10s/15s] OK
* checking HTML version of manual ... [9s/13s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/gannet/ripley/R/packages/tests-MKL/simstudy.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 12:17.70, 519.47 + 39.00