* using log directory ‘/data/localhost/ripley/R/packages/tests-MKL/sfa.Rcheck’
* using R Under development (unstable) (2026-10-30 r90795)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
    GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
* running under: Fedora Linux 44 (Server Edition)
* using session charset: UTF-8
* current time: 2026-10-30 09:09:20 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘sfa/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘sfa’ version ‘1.2.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘sfa’ can be installed ... [21s/22s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [42s/44s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [19s/20s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [100s/106s]
 [101s/106s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(sfa)
  sfa version 1.2.0
  Type citation('sfa') for citing this package in publications.
  > 
  > test_check("sfa")
  Saving _problems/test-selsfm-124.R
  Saving _problems/test-selsfm-186.R
  Saving _problems/test-selsfm-193.R
  [ FAIL 3 | WARN 3 | SKIP 289 | PASS 1926 ]
  
  ══ Skipped tests (289) ═════════════════════════════════════════════════════════
  • On CRAN (285): 'test-collinear-start.R:70:3', 'test-collinear-start.R:87:3',
    'test-collinear-start.R:104:3', 'test-cols.R:4:3', 'test-cols.R:27:3',
    'test-cols.R:47:3', 'test-cols.R:78:3', 'test-cols.R:89:3',
    'test-cols.R:117:3', 'test-cols.R:128:3', 'test-cols.R:142:3',
    'test-composed-cdf.R:70:3', 'test-copsfm.R:54:3', 'test-copsfm.R:75:3',
    'test-copsfm.R:181:3', 'test-copsfm.R:196:3', 'test-cw.R:46:3',
    'test-cw.R:120:3', 'test-dea.R:76:3', 'test-defensive.R:80:3',
    'test-diagnostics.R:15:3', 'test-diagnostics.R:36:3',
    'test-diagnostics.R:52:3', 'test-diagnostics.R:58:3',
    'test-diagnostics.R:148:3', 'test-diagnostics.R:164:3',
    'test-diagnostics.R:176:3', 'test-diagnostics.R:197:3',
    'test-domain-guards.R:37:3', 'test-efficiency-ci.R:54:3',
    'test-efficiency-ci.R:80:3', 'test-efficiency-ci.R:113:3',
    'test-efficiency-ci.R:120:3', 'test-efficiency-ci.R:132:3',
    'test-endogeneity-test.R:30:3', 'test-endogeneity-test.R:45:3',
    'test-endogeneity-test.R:60:3', 'test-endogeneity-test.R:71:3',
    'test-esfm.R:70:3', 'test-esfm.R:83:3', 'test-esfm.R:97:3',
    'test-esfm.R:106:3', 'test-gof.R:32:3', 'test-gof.R:45:3', 'test-gof.R:55:3',
    'test-gof.R:71:3', 'test-gof.R:79:3', 'test-gtre-draws.R:26:3',
    'test-gtre-fml-start.R:65:3', 'test-gtre-fml-start.R:80:3',
    'test-het.R:15:3', 'test-het.R:34:3', 'test-het.R:46:3', 'test-het.R:66:3',
    'test-het.R:76:3', 'test-het.R:84:3', 'test-het.R:95:3', 'test-het.R:103:3',
    'test-inefficiency-test.R:28:3', 'test-inefficiency-test.R:38:3',
    'test-inefficiency-test.R:52:3', 'test-inefficiency-test.R:93:3',
    'test-inefficiency-test.R:116:3', 'test-influence.R:16:3',
    'test-influence.R:40:3', 'test-influence.R:73:3', 'test-influence.R:93:3',
    'test-influence.R:125:3', 'test-internals.R:22:3', 'test-kss.R:20:3',
    'test-kss.R:36:3', 'test-kss.R:50:3', 'test-kss.R:64:3', 'test-kss.R:99:3',
    'test-kss.R:113:3', 'test-kss.R:125:3', 'test-kss.R:158:3',
    'test-kss.R:187:3', 'test-kss.R:206:3', 'test-lcsfm-homogeneity.R:50:3',
    'test-lcsfm-homogeneity.R:62:3', 'test-lcsfm-homogeneity.R:77:3',
    'test-lcsfm-homogeneity.R:94:3', 'test-lcsfm-homogeneity.R:112:3',
    'test-lcsfm-homogeneity.R:127:3', 'test-lcsfm-homogeneity.R:143:3',
    'test-lcsfm-homogeneity.R:157:3', 'test-lcsfm-homogeneity.R:179:3',
    'test-lcsfm-homogeneity.R:230:3', 'test-lcsfm-homogeneity.R:251:3',
    'test-lcsfm.R:59:3', 'test-lcsfm.R:87:3', 'test-lcsfm.R:111:3',
    'test-log-pcf.R:44:3', 'test-log-pcf.R:75:3',
    'test-marginal-effects-components.R:10:3',
    'test-marginal-effects-components.R:37:3',
    'test-marginal-effects-components.R:50:3',
    'test-marginal-effects-psfm.R:17:3', 'test-marginal-effects-psfm.R:35:3',
    'test-marginal-effects-psfm.R:51:3', 'test-marginal-effects.R:10:3',
    'test-marginal-effects.R:43:3', 'test-marginal-effects.R:54:3',
    'test-marginal-effects.R:91:3', 'test-meanefficiency.R:13:3',
    'test-meanefficiency.R:32:3', 'test-meanefficiency.R:53:3',
    'test-meanefficiency.R:72:3', 'test-model-selection.R:26:3',
    'test-model-selection.R:38:3', 'test-model-selection.R:53:3',
    'test-model-selection.R:66:3', 'test-model-selection.R:85:3',
    'test-model-selection.R:97:3', 'test-model-selection.R:113:3',
    'test-model-selection.R:125:3', 'test-model-selection.R:148:3',
    'test-model-selection.R:158:3', 'test-model-selection.R:177:3',
    'test-moment-range.R:28:3', 'test-moment-range.R:67:3',
    'test-moment-range.R:177:3', 'test-moment-range.R:218:3',
    'test-mundlak.R:102:3', 'test-mundlak.R:123:3', 'test-mundlak.R:137:3',
    'test-ne-sigmav-cancellation.R:20:3', 'test-ne-sigmav-cancellation.R:56:3',
    'test-ne-sigmav-cancellation.R:70:3', 'test-ng.R:37:3', 'test-ng.R:55:3',
    'test-ng.R:103:3', 'test-nnak-start.R:11:3', 'test-nnak-start.R:29:3',
    'test-nnak-start.R:54:3', 'test-nnak-start.R:70:3', 'test-npsfm.R:50:3',
    'test-npsfm.R:72:3', 'test-npsfm.R:89:3', 'test-npsfm.R:105:3',
    'test-npsfm.R:116:3', 'test-npsfm.R:128:3', 'test-npsfm.R:141:3',
    'test-npsfm.R:158:3', 'test-npsfm.R:170:3', 'test-npsfm.R:200:3',
    'test-nr.R:69:3', 'test-nr.R:117:3', 'test-nr.R:132:3', 'test-nr.R:153:3',
    'test-panel-boundary.R:17:3', 'test-panel-boundary.R:54:3',
    'test-panel-boundary.R:66:3', 'test-panel-boundary.R:146:3',
    'test-panel-boundary.R:200:3', 'test-panel-boundary.R:212:3',
    'test-panel-boundary.R:222:3', 'test-panel-boundary.R:251:3',
    'test-panel-classical.R:14:3', 'test-panel-classical.R:39:3',
    'test-panel-classical.R:61:3', 'test-panel-classical.R:81:3',
    'test-panel-classical.R:109:3', 'test-panel-classical.R:122:3',
    'test-panel-classical.R:137:3', 'test-panel-classical.R:152:3',
    'test-pcomposed.R:137:3', 'test-pl-mvtn.R:47:3', 'test-pl-mvtn.R:72:3',
    'test-pl-mvtn.R:91:3', 'test-psfm.R:4:3', 'test-psfm.R:34:3',
    'test-psfm.R:44:3', 'test-psfm.R:60:3', 'test-psfm.R:73:3',
    'test-psfm.R:98:3', 'test-psfm.R:129:3', 'test-psfm.R:168:3',
    'test-psfm.R:178:3', 'test-psfm.R:198:3', 'test-psfm.R:208:3',
    'test-robust-tuning.R:129:3', 'test-robust-tuning.R:153:3',
    'test-robust-tuning.R:167:3', 'test-robust-tuning.R:197:3',
    'test-robust-tuning.R:216:3', 'test-sandwich.R:11:3', 'test-sandwich.R:26:3',
    'test-sandwich.R:39:3', 'test-sandwich.R:45:3', 'test-sandwich.R:64:3',
    'test-scaling.R:17:3', 'test-scaling.R:33:3', 'test-scaling.R:75:3',
    'test-selsfm-kts.R:58:3', 'test-selsfm-kts.R:77:3',
    'test-selsfm-kts.R:118:3', 'test-selsfm-kts.R:137:3',
    'test-sfareg-methods.R:4:3', 'test-sfareg-methods.R:27:3',
    'test-sfareg-methods.R:36:3', 'test-sfareg-methods.R:43:3',
    'test-sfareg-methods.R:57:3', 'test-sfareg-methods.R:97:3',
    'test-sfareg-methods.R:105:3', 'test-sfm.R:7:3', 'test-sfm.R:33:3',
    'test-sfm.R:46:3', 'test-sfm.R:62:3', 'test-sfm.R:80:3', 'test-sfm.R:90:3',
    'test-sfm.R:114:3', 'test-sfma.R:72:3', 'test-sfma.R:93:3',
    'test-sfma.R:103:3', 'test-sfma.R:132:3', 'test-sfma.R:152:3',
    'test-sfma.R:167:3', 'test-sfma.R:179:3', 'test-simulation-se.R:10:3',
    'test-simulation-se.R:31:3', 'test-skewness-test.R:45:3',
    'test-skewness-test.R:81:3', 'test-sml-draws.R:101:3',
    'test-sml-draws.R:121:3', 'test-sml-draws.R:333:3', 'test-spec-test.R:28:3',
    'test-spec-test.R:84:3', 'test-spec-test.R:103:3', 'test-spec-test.R:117:3',
    'test-spec-test.R:132:3', 'test-spec-test.R:147:3', 'test-spec-test.R:174:3',
    'test-start-from.R:11:3', 'test-start-from.R:36:3', 'test-texreg.R:17:3',
    'test-texreg.R:39:3', 'test-texreg.R:52:3', 'test-tfe.R:23:3',
    'test-tfe.R:37:3', 'test-tfe.R:64:3', 'test-tfe.R:86:3', 'test-tfe.R:105:3',
    'test-tfe.R:126:3', 'test-tfe.R:140:3', 'test-thn.R:51:3',
    'test-thn.R:129:3', 'test-thn.R:148:3', 'test-tht.R:58:3', 'test-tht.R:71:3',
    'test-tht.R:138:3', 'test-tsl.R:26:3', 'test-tsl.R:79:3', 'test-tsl.R:115:3',
    'test-ttsfm-numerics.R:39:3', 'test-ttsfm-numerics.R:50:3',
    'test-ttsfm-z-link.R:31:3', 'test-ttsfm-z-link.R:63:3', 'test-uhet.R:14:3',
    'test-uhet.R:30:3', 'test-uhet.R:46:3', 'test-uhet.R:54:3',
    'test-uhet.R:61:3', 'test-uhet.R:77:3', 'test-uhet.R:95:3',
    'test-weights.R:12:3', 'test-weights.R:20:3', 'test-weights.R:36:3',
    'test-weights.R:55:3', 'test-wrong-skew-boundary.R:11:3',
    'test-wrong-skew-boundary.R:34:3', 'test-wrong-skew-boundary.R:59:3',
    'test-z-link.R:10:3', 'test-z-link.R:20:3', 'test-z-link.R:40:3',
    'test-zsfm-ttsfm.R:4:3', 'test-zsfm-ttsfm.R:16:3', 'test-zsfm-ttsfm.R:23:3',
    'test-zsfm-ttsfm.R:35:3', 'test-zsfm-ttsfm.R:52:3',
    'test-zsfm-ttsfm.R:117:3', 'test-zsfm-ttsfm.R:134:3',
    'test-zsfm-ttsfm.R:154:3', 'test-zsfm-ttsfm.R:174:3'
  • R/ source not reachable (installed package) (1): 'test-domain-guards.R:25:3'
  • TTHN is slow and numerically fragile; set SFA_TEST_SLOW to run it (1):
    'test-ttsfm-z-link.R:69:3'
  • TTHN is very slow and currently unreliable; set SFA_TEST_SLOW to run it (1):
    'test-zsfm-ttsfm.R:82:3'
  • the only DGP with both z and zp targets TTHN; see above (1):
    'test-zsfm-ttsfm.R:91:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-selsfm.R:124:3'): the same seed gives the same fit, and the caller's RNG is untouched ──
  Expected `a$out[, "par"]` to equal `b$out[, "par"]`.
  Differences:
  6/6 mismatches (average diff: 7.56e-08)
  [1]  0.7288 -  0.7288 ==  1.23e-07
  [2]  0.5570 -  0.5570 == -7.71e-08
  [3] -0.0953 - -0.0953 ==  1.55e-07
  [4]  0.4879 -  0.4879 ==  2.70e-08
  [5]  0.8380 -  0.8380 == -4.93e-08
  [6] -0.2136 - -0.2136 ==  2.23e-08
  ── Failure ('test-selsfm.R:183:3'): a binary factor or logical selector is accepted ──
  Expected `...[]` to equal `num$out[, "par"]`.
  Differences:
  5/6 mismatches (average diff: 2.72e-07)
  [1] 1.126 - 1.126 == -3.39e-07
  [2] 0.450 - 0.450 ==  1.52e-07
  [3] 0.320 - 0.320 == -5.98e-07
  [4] 0.604 - 0.604 == -2.12e-07
  [5] 0.822 - 0.822 ==  6.09e-08
  ── Failure ('test-selsfm.R:190:3'): a binary factor or logical selector is accepted ──
  Expected `...[]` to equal `num$out[, "par"]`.
  Differences:
  5/6 mismatches (average diff: 2.93e-07)
  [1] 1.126 - 1.126 == -4.40e-07
  [2] 0.450 - 0.450 ==  2.39e-07
  [3] 0.320 - 0.320 == -3.33e-07
  [4] 0.604 - 0.604 == -3.66e-07
  [5] 0.822 - 0.822 ==  8.48e-08
  
  [ FAIL 3 | WARN 3 | SKIP 289 | PASS 1926 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [42s/60s] OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/localhost/ripley/R/packages/tests-MKL/sfa.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 5:29.28, 278.76 + 12.66