* using log directory ‘/data/gannet/ripley/R/packages/tests-MKL/scopr.Rcheck’ * using R Under development (unstable) (2023-06-03 r84490) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc-13 (GCC) 13.1.0 GNU Fortran (GCC) 13.1.0 * running under: Fedora Linux 36 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘scopr/DESCRIPTION’ ... OK * this is package ‘scopr’ version ‘0.3.4’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘scopr’ can be installed ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘curl’ All declared Imports should be used. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [7s/10s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [21s/49s] [21s/50s] ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(scopr) Loading required package: behavr Loading required package: data.table > > test_check("scopr") machine_name date time test 1 E_014 2016-01-25 21:36:04 1 2 E_014 2016-02-17 2 3 E_029 2016-01-25 3 [ FAIL 2 | WARN 4 | SKIP 0 | PASS 46 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-link_ethoscope_metadata_remote.R:14:3'): link_ethoscope_metadata_remote with date and machine name ── Error in `download.file(src, tmp, mode = "wb", method = "libcurl", quiet = TRUE)`: cannot open URL 'https://raw.githubusercontent.com/rethomics/scopr/master/inst/extdata/ethoscope_results/014/E_014/2016-01-25_21-46-14/2016-01-25_21-46-14_014.db' Backtrace: ▆ 1. ├─scopr:::link_ethoscope_metadata_remote(...) at test-link_ethoscope_metadata_remote.R:14:2 2. │ ├─...[] 3. │ └─data.table:::`[.data.table`(...) 4. └─scopr:::mirror_ethoscope_results(...) 5. └─scopr:::download_create_dir(remote, local) 6. ├─base::tryCatch(...) 7. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 8. └─utils::download.file(...) ── Error ('test-link_ethoscope_metadata_remote.R:51:3'): parse_query with date, machine name, and ROIs ── Error in `download.file(src, tmp, mode = "wb", method = "libcurl", quiet = TRUE)`: cannot open URL 'https://raw.githubusercontent.com/rethomics/scopr/master/inst/extdata/ethoscope_results/014/E_014/2016-01-25_21-46-14/2016-01-25_21-46-14_014.db' Backtrace: ▆ 1. ├─scopr:::link_ethoscope_metadata_remote(...) at test-link_ethoscope_metadata_remote.R:51:2 2. │ ├─...[] 3. │ └─data.table:::`[.data.table`(...) 4. └─scopr:::mirror_ethoscope_results(...) 5. └─scopr:::download_create_dir(remote, local) 6. ├─base::tryCatch(...) 7. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 8. └─utils::download.file(...) [ FAIL 2 | WARN 4 | SKIP 0 | PASS 46 ] Error: Test failures Execution halted * checking PDF version of manual ... [6s/13s] OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 NOTE See ‘/data/gannet/ripley/R/packages/tests-MKL/scopr.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 2:03.38, 61.96 + 8.97