* using log directory ‘/data/localhost/ripley/R/packages/tests-MKL/scdhlm.Rcheck’
* using R Under development (unstable) (2026-10-30 r90795)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
    GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
* running under: Fedora Linux 44 (Server Edition)
* using session charset: UTF-8
* current time: 2026-10-30 08:51:19 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘scdhlm/DESCRIPTION’ ... OK
* this is package ‘scdhlm’ version ‘0.7.4’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘scdhlm’ can be installed ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [43s/44s]
 [44s/45s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(scdhlm)
  Loading required package: nlme
  > 
  > test_check("scdhlm")
  Saving _problems/test-calc_BCSMD-291.R
  Saving _problems/test-calc_BCSMD-299.R
  Saving _problems/test-calc_BCSMD-301.R
  Saving _problems/test-calc_BCSMD-303.R
  Saving _problems/test-calc_BCSMD-304.R
  Saving _problems/test-calc_BCSMD-468.R
  Saving _problems/test-calc_BCSMD-516.R
  Saving _problems/test-calc_BCSMD-591.R
  Saving _problems/test_HPS_examples-123.R
  Saving _problems/test_HPS_examples-127.R
  [ FAIL 10 | WARN 0 | SKIP 11 | PASS 261 ]
  
  ══ Skipped tests (11) ══════════════════════════════════════════════════════════
  • Auxiliary dataset not included in package. (1): 'test_user_examples.R:5:3'
  • On CRAN (2): 'test-calc_BCSMD.R:224:3', 'test-calc_BCSMD.R:310:3'
  • dependenciesInstalled() is not TRUE (1): 'test-scdhlm-app.R:18:1'
  • empty test (7): 'test_HPS_functions.R:9:1', 'test_HPS_functions.R:13:1',
    'test_HPS_functions.R:17:1', 'test_HPS_functions.R:21:1',
    'test_HPS_functions.R:25:1', 'test_HPS_functions.R:29:1',
    'test_HPS_functions.R:33:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-calc_BCSMD.R:291:3'): calc_BCSMD() returns the same result as g_mlm() for Bryant 2018 data with a simple model. ──
  Expected `Bry_g1_mlm` to equal `Bry_BCSMD`.
  Differences:
  Component "p_beta": Mean relative difference: 1.510198e-06
  Component "r_theta": Mean relative difference: 1.988363e-07
  Component "delta_AB": Mean relative difference: 1.609616e-06
  Component "nu": Mean relative difference: 6.960708e-07
  Component "kappa": Mean relative difference: 3.513941e-07
  Component "g_AB": Mean relative difference: 1.601374e-06
  Component "SE_g_AB": Mean relative difference: 4.15776e-07
  Component "beta": Mean relative difference: 3.71302e-07
  Component "SE_beta": Mean relative difference: 1.702538e-07
  ...
  ── Failure ('test-calc_BCSMD.R:299:3'): calc_BCSMD() returns the same result as g_mlm() for Bryant 2018 data with a simple model. ──
  Expected `Bry_g1_mlm$g_AB` to equal `Bry_BCSMD_summary$`BC-SMD estimate``.
  Differences:
  1/1 mismatches
  [1] 0.593 - 0.593 == 1.02e-07
  ── Failure ('test-calc_BCSMD.R:301:3'): calc_BCSMD() returns the same result as g_mlm() for Bryant 2018 data with a simple model. ──
  Expected `Bry_g1_mlm$nu` to equal `Bry_BCSMD_summary$`Degrees of freedom``.
  Differences:
  1/1 mismatches
  [1] 64.6 - 64.6 == -5.07e-06
  ── Failure ('test-calc_BCSMD.R:303:3'): calc_BCSMD() returns the same result as g_mlm() for Bryant 2018 data with a simple model. ──
  Expected `CI_g(Bry_g1_mlm)[1]` to equal `Bry_BCSMD_summary$`95% CI (lower)``.
  Differences:
  1/1 mismatches
  [1] 0.408 - 0.408 == 9.37e-08
  ── Failure ('test-calc_BCSMD.R:304:3'): calc_BCSMD() returns the same result as g_mlm() for Bryant 2018 data with a simple model. ──
  Expected `CI_g(Bry_g1_mlm)[2]` to equal `Bry_BCSMD_summary$`95% CI (upper)``.
  Differences:
  1/1 mismatches
  [1] 0.777 - 0.777 == 1.11e-07
  ── Failure ('test-calc_BCSMD.R:468:3'): The batch_calc_BCSMD() works for MBP design. ──
  Expected `Laski2_single` to equal `as.data.frame(res2_batch[2, 2:12], )`.
  Differences:
  Component "BC-SMD estimate": Mean relative difference: 0.0002385329
  Component "Std. Error": Mean relative difference: 0.0001185845
  Component "95% CI (lower)": Mean relative difference: 0.000536869
  Component "95% CI (upper)": Mean relative difference: 0.0001733936
  Component "Degrees of freedom": Mean relative difference: 0.0008392465
  Component "Auto-correlation": Mean relative difference: 5.759588e-05
  Component "Intra-class correlation": Mean relative difference: 0.0001250948
  ── Failure ('test-calc_BCSMD.R:516:3'): The batch_calc_BCSMD() works for MBP design. ──
  Expected `Laski2_single` to equal `as.data.frame(res4_batch[2, 2:12], )`.
  Differences:
  Component "BC-SMD estimate": Mean relative difference: 0.0001092237
  Component "Std. Error": Mean relative difference: 4.509432e-05
  Component "95% CI (lower)": Mean relative difference: 0.0002624155
  Component "95% CI (upper)": Mean relative difference: 7.577548e-05
  Component "Degrees of freedom": Mean relative difference: 0.0003855197
  Component "Auto-correlation": Mean relative difference: 1.526628e-06
  Component "Intra-class correlation": Mean relative difference: 5.691149e-05
  ── Failure ('test-calc_BCSMD.R:591:3'): The batch_calc_BCSMD() works for RMBB design. ──
  Expected `Thi2_single_2001` to equal `as.data.frame(Thi2_batch[1, 2:12], )`.
  Differences:
  Component "BC-SMD estimate": Mean relative difference: 2.431739e-08
  Component "95% CI (lower)": Mean relative difference: 4.051333e-08
  Component "95% CI (upper)": Mean relative difference: 1.600359e-08
  Component "Degrees of freedom": Mean relative difference: 1.082136e-07
  Component "Auto-correlation": Mean relative difference: 7.062723e-08
  ── Failure ('test_HPS_examples.R:123:3'): Order doesn't matter for multiple baseline designs ──
  Expected `Saddler_orig` to be identical to `Saddler_new`.
  Differences:
  Objects equal but not identical
  ── Failure ('test_HPS_examples.R:127:3'): Order doesn't matter for multiple baseline designs ──
  Expected `Laski_orig` to be identical to `Laski_new`.
  Differences:
  Objects equal but not identical
  
  [ FAIL 10 | WARN 0 | SKIP 11 | PASS 261 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [13s/13s] OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/localhost/ripley/R/packages/tests-MKL/scdhlm.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 2:03.68, 106.10 + 8.61