* using log directory ‘/data/gannet/ripley/R/packages/tests-MKL/rsolr.Rcheck’ * using R Under development (unstable) (2022-06-29 r82536) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘rsolr/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘rsolr’ version ‘0.0.13’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘rsolr’ can be installed ... [55s/72s] OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [45s/60s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [6s/15s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘rsolr_unit_tests.R’ [11s/57s] [12s/58s] ERROR Running the tests in ‘tests/rsolr_unit_tests.R’ failed. Complete output: > rsolr:::.test() Attaching package: 'BiocGenerics' The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which.max, which.min Attaching package: 'rsolr' The following object is masked from 'package:stats': ftable The following object is masked from 'package:base': grouping Timing stopped at: 0.141 0.027 2.943 Error in value[[3L]](cond) : Failed to retrieve schema. rsolr requires schema via REST or as XML from admin module. Error from REST: Error in h(simpleError(msg, call)): error in evaluating the argument 'X' in selecting a method for function 'lapply': Not Found Timing stopped at: 0.05 0.003 0.238 Error in value[[3L]](cond) : Failed to retrieve schema. rsolr requires schema via REST or as XML from admin module. Error from REST: Error in h(simpleError(msg, call)): error in evaluating the argument 'X' in selecting a method for function 'lapply': Not Found Timing stopped at: 0.048 0.004 0.448 Error in value[[3L]](cond) : Failed to retrieve schema. rsolr requires schema via REST or as XML from admin module. Error from REST: Error in h(simpleError(msg, call)): error in evaluating the argument 'X' in selecting a method for function 'lapply': Not Found Timing stopped at: 0.071 0.019 0.401 Error in value[[3L]](cond) : Failed to retrieve schema. rsolr requires schema via REST or as XML from admin module. Error from REST: Error in h(simpleError(msg, call)): error in evaluating the argument 'X' in selecting a method for function 'lapply': Not Found Timing stopped at: 0.047 0.003 0.247 Error in value[[3L]](cond) : Failed to retrieve schema. rsolr requires schema via REST or as XML from admin module. Error from REST: Error in h(simpleError(msg, call)): error in evaluating the argument 'X' in selecting a method for function 'lapply': Not Found Starting Solr... Use options(verbose=TRUE) to diagnose any problems. WARNING: An illegal reflective access operation has occurred WARNING: Illegal reflective access by org.xnio.nio.NioXnio$2 (file:/data/gannet/ripley/.local/share/R/rsolr/solr-undertow-1.6.0-with-solr-5.5.0/lib/xnio-nio-3.3.4.Final.jar) to constructor sun.nio.ch.EPollSelectorProvider() WARNING: Please consider reporting this to the maintainers of org.xnio.nio.NioXnio$2 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations WARNING: All illegal access operations will be denied in a future release Solr started at: http://localhost:8983/solr/Cars93 Starting Solr... Use options(verbose=TRUE) to diagnose any problems. WARNING: An illegal reflective access operation has occurred WARNING: Illegal reflective access by org.xnio.nio.NioXnio$2 (file:/data/gannet/ripley/.local/share/R/rsolr/solr-undertow-1.6.0-with-solr-5.5.0/lib/xnio-nio-3.3.4.Final.jar) to constructor sun.nio.ch.EPollSelectorProvider() WARNING: Please consider reporting this to the maintainers of org.xnio.nio.NioXnio$2 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations WARNING: All illegal access operations will be denied in a future release Solr started at: http://localhost:8983/solr/Cars93 RUNIT TEST PROTOCOL -- Fri Jul 1 05:10:08 2022 *********************************************** Number of test functions: 7 Number of errors: 5 Number of failures: 0 1 Test Suite : rsolr RUnit Tests - 7 test functions, 5 errors, 0 failures ERROR in test_SolrCore_accessors: Error in value[[3L]](cond) : Failed to retrieve schema. rsolr requires schema via REST or as XML from admin module. Error from REST: Error in h(simpleError(msg, call)): error in evaluating the argument 'X' in selecting a method for function 'lapply': Not Found ERROR in test_SolrFrame_accessors: Error in value[[3L]](cond) : Failed to retrieve schema. rsolr requires schema via REST or as XML from admin module. Error from REST: Error in h(simpleError(msg, call)): error in evaluating the argument 'X' in selecting a method for function 'lapply': Not Found ERROR in test_SolrList_accessors: Error in value[[3L]](cond) : Failed to retrieve schema. rsolr requires schema via REST or as XML from admin module. Error from REST: Error in h(simpleError(msg, call)): error in evaluating the argument 'X' in selecting a method for function 'lapply': Not Found ERROR in test_SolrList_queries: Error in value[[3L]](cond) : Failed to retrieve schema. rsolr requires schema via REST or as XML from admin module. Error from REST: Error in h(simpleError(msg, call)): error in evaluating the argument 'X' in selecting a method for function 'lapply': Not Found ERROR in test_SolrQuery: Error in value[[3L]](cond) : Failed to retrieve schema. rsolr requires schema via REST or as XML from admin module. Error from REST: Error in h(simpleError(msg, call)): error in evaluating the argument 'X' in selecting a method for function 'lapply': Not Found Test files with failing tests test_SolrCore.R test_SolrCore_accessors test_SolrFrame.R test_SolrFrame_accessors test_SolrList.R test_SolrList_accessors test_SolrList_queries test_SolrQuery.R test_SolrQuery Error in get("testPackage", getNamespace("BiocGenerics"))("rsolr") : unit tests failed for package rsolr Calls: -> Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking re-building of vignette outputs ... [43s/153s] OK * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/data/gannet/ripley/R/packages/tests-MKL/rsolr.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 8:45.19, 267.33 + 18.35