* using log directory ‘/data/gannet/ripley/R/packages/tests-MKL/rapbase.Rcheck’
* using R Under development (unstable) (2023-06-19 r84569)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-13 (GCC) 13.1.0
    GNU Fortran (GCC) 13.1.0
* running under: Fedora Linux 36 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘rapbase/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘rapbase’ version ‘1.24.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘rapbase’ can be installed ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [69s/130s]
 [69s/131s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(rapbase)
  > 
  > test_check("rapbase")
  /usr/bin/pandoc +RTS -K512m -RTS howWeDealWithPersonalData.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/218fc167217993.html --lua-filter /data/gannet2/ripley/R/test-MKL/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/file218fc123a6d175 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet2/ripley/R/test-MKL/rmarkdown/rmd/fragment/default.html --no-highlight 
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/218fc16df2a85c.html --lua-filter /data/gannet2/ripley/R/test-MKL/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/file218fc17d20ec4f --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet2/ripley/R/test-MKL/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/rmarkdown-str218fc12b27317d.html 
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/218fc17ca08f04.html --lua-filter /data/gannet2/ripley/R/test-MKL/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/file218fc1c1dcf41 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet2/ripley/R/test-MKL/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/rmarkdown-str218fc1158a5f92.html 
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/218fc162ada430.html --lua-filter /data/gannet2/ripley/R/test-MKL/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/file218fc147aba0d1 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet2/ripley/R/test-MKL/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/rmarkdown-str218fc15b5b6e28.html 
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/218fc1456a9472.html --lua-filter /data/gannet2/ripley/R/test-MKL/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/file218fc154de1e6b --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet2/ripley/R/test-MKL/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/rmarkdown-str218fc166325237.html 
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/218fc17c7b401f.html --lua-filter /data/gannet2/ripley/R/test-MKL/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/file218fc17c7c5e53 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet2/ripley/R/test-MKL/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/rmarkdown-str218fc12d770917.html 
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/218fc17d300f27.html --lua-filter /data/gannet2/ripley/R/test-MKL/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/file218fc12de064c9 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet2/ripley/R/test-MKL/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/rmarkdown-str218fc16c3f5e89.html 
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/218fc13992589a.html --lua-filter /data/gannet2/ripley/R/test-MKL/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/file218fc13fb962c3 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet2/ripley/R/test-MKL/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/rmarkdown-str218fc11e0862c0.html 
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/218fc11759c172.html --lua-filter /data/gannet2/ripley/R/test-MKL/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/file218fc134b0acf3 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet2/ripley/R/test-MKL/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/rmarkdown-str218fc1225fd5bc.html 
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/218fc148809c61.html --lua-filter /data/gannet2/ripley/R/test-MKL/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/file218fc150cf53bc --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet2/ripley/R/test-MKL/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/rmarkdown-str218fc127a0d6f0.html 
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/218fc12eb2f9bd.html --lua-filter /data/gannet2/ripley/R/test-MKL/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/file218fc1695c7aa8 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet2/ripley/R/test-MKL/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/rmarkdown-str218fc14b781b13.html 
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/218fc12d2346f1.html --lua-filter /data/gannet2/ripley/R/test-MKL/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/file218fc14a6bce4a --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet2/ripley/R/test-MKL/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/rmarkdown-str218fc1511a0c66.html 
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/218fc16433b334.html --lua-filter /data/gannet2/ripley/R/test-MKL/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/file218fc16759787a --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet2/ripley/R/test-MKL/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/rmarkdown-str218fc19571a8d.html 
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/218fc1214f4d7f.html --lua-filter /data/gannet2/ripley/R/test-MKL/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/file218fc13b5120b4 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet2/ripley/R/test-MKL/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/rmarkdown-str218fc176d833a7.html 
       [,1]
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/218fc16e2a6051.html --lua-filter /data/gannet2/ripley/R/test-MKL/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/file218fc149d23886 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet2/ripley/R/test-MKL/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/rmarkdown-str218fc1496fa44c.html 
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/218fc11173de3.html --lua-filter /data/gannet2/ripley/R/test-MKL/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/file218fc12c1b49e3 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet2/ripley/R/test-MKL/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/rmarkdown-str218fc138706d66.html 
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/218fc187ad4fd.html --lua-filter /data/gannet2/ripley/R/test-MKL/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/file218fc172d7df81 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet2/ripley/R/test-MKL/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/rmarkdown-str218fc1369c7a04.html 
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/218fc130366900.html --lua-filter /data/gannet2/ripley/R/test-MKL/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/file218fc116997068 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet2/ripley/R/test-MKL/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/rmarkdown-str218fc11527e04f.html 
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/218fc11fb5c917.html --lua-filter /data/gannet2/ripley/R/test-MKL/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/file218fc1368ad6fa --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet2/ripley/R/test-MKL/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/rmarkdown-str218fc14ac915ed.html 
  /usr/bin/pandoc +RTS -K512m -RTS exportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/218fc15c040835.html --lua-filter /data/gannet2/ripley/R/test-MKL/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/file218fc1cd91af2 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet2/ripley/R/test-MKL/rmarkdown/rmd/fragment/default.html --no-highlight 
  /usr/bin/pandoc +RTS -K512m -RTS howWeDealWithPersonalData.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/218fc16aa83482.html --lua-filter /data/gannet2/ripley/R/test-MKL/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/file218fc15df00fde --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet2/ripley/R/test-MKL/rmarkdown/rmd/fragment/default.html --no-highlight 
  /usr/bin/pandoc +RTS -K512m -RTS howWeDealWithPersonalData.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/218fc13b09e40b.html --lua-filter /data/gannet2/ripley/R/test-MKL/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/file218fc182adb6a --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet2/ripley/R/test-MKL/rmarkdown/rmd/fragment/default.html --no-highlight 
  /usr/bin/pandoc +RTS -K512m -RTS statsGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/218fc155b0dc45.html --lua-filter /data/gannet2/ripley/R/test-MKL/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet2/ripley/R/test-MKL/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/file218fc12dbf9f0b --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet2/ripley/R/test-MKL/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/RtmplAMBGt/working_dir/RtmpxLy2to/rmarkdown-str218fc116e76063.html 
  [ FAIL 1 | WARN 0 | SKIP 37 | PASS 247 ]
  
  ══ Skipped tests (37) ══════════════════════════════════════════════════════════
  • Possible lack of database infrastructure (35): 'test-auto-report-db.R:48:3',
    'test-auto-report-db.R:102:3', 'test-auto-report-db.R:107:3',
    'test-auto-report-db.R:112:3', 'test-auto-report-db.R:117:3',
    'test-dbConnection.R:35:3', 'test-dbConnection.R:96:3',
    'test-dbConnection.R:107:3', 'test-dbConnection.R:113:3',
    'test-dbConnection.R:122:3', 'test-dbConnection.R:130:3',
    'test-dbConnection.R:138:3', 'test-log.R:142:3', 'test-log.R:163:3',
    'test-log.R:168:3', 'test-log.R:184:3', 'test-log.R:189:3',
    'test-log.R:198:3', 'test-log.R:205:3', 'test-moduleExport.R:40:3',
    'test-moduleExport.R:99:3', 'test-moduleExport.R:115:5',
    'test-moduleExport.R:130:5', 'test-stagingData.R:130:3',
    'test-stagingData.R:170:3', 'test-stagingData.R:176:3',
    'test-stagingData.R:185:3', 'test-stagingData.R:193:3',
    'test-stagingData.R:199:3', 'test-stagingData.R:206:3',
    'test-stagingData.R:211:3', 'test-stagingData.R:216:3',
    'test-stagingData.R:221:3', 'test-stagingData.R:226:3',
    'test-stagingData.R:232:3'
  • Test skipped Windblows. Please fix later! (1): 'test-renderRmd.R:15:3'
  • cran autocheck false positive on debian (1):
    'test-auto-report-functions.R:220:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-auto-report-functions.R:213:3'): a report sceduled for today with startDate in future is not run ──
  `runAutoReport(dryRun = TRUE)` produced messages.
  
  [ FAIL 1 | WARN 0 | SKIP 37 | PASS 247 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/gannet/ripley/R/packages/tests-MKL/rapbase.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 2:54.93, 100.94 + 11.70