* using log directory ‘/data/gannet/ripley/R/packages/tests-MKL/qcluster.Rcheck’
* using R Under development (unstable) (2026-04-20 r89922)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)
    GNU Fortran (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)
* running under: Fedora Linux 42 (Workstation Edition)
* using session charset: UTF-8
* current time: 2026-04-20 20:18:03 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘qcluster/DESCRIPTION’ ... OK
* this is package ‘qcluster’ version ‘2.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘qcluster’ can be installed ... [13s/51s] OK
* used C compiler: ‘gcc (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [14s/36s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [7s/24s]
 [7s/26s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(qcluster)
  
  QCLUSTER: tuning clustering methods and cluster validation via resampling 
  Type 'citation("qcluster")' for citing this R package in publications.
  
  > 
  > test_check("qcluster")
  Saving _problems/test-gmix-clustering-91.R
  Saving _problems/test-gmix-clustering-92.R
  [ FAIL 2 | WARN 1 | SKIP 0 | PASS 112 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-gmix-clustering.R:91:3'): gmix handles imbalanced clusters with a soft custom initialization ──
  Expected `fit$info$code` to equal 1.
  Differences:
    `actual`: 2.0
  `expected`: 1.0
  
  ── Failure ('test-gmix-clustering.R:92:3'): gmix handles imbalanced clusters with a soft custom initialization ──
  Expected `fit$iter` to equal 4L.
  Differences:
    `actual`: 300
  `expected`:   4
  
  
  [ FAIL 2 | WARN 1 | SKIP 0 | PASS 112 ]
  Error:
  ! Test failures.
  Execution halted
* checking PDF version of manual ... [10s/28s] OK
* checking HTML version of manual ... [7s/23s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/gannet/ripley/R/packages/tests-MKL/qcluster.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 4:25.26, 73.72 + 9.80