* using log directory ‘/data/localhost/ripley/R/packages/tests-MKL/phylopred.Rcheck’
* using R Under development (unstable) (2026-10-28 r90786)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
    GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
* running under: Fedora Linux 44 (Server Edition)
* using session charset: UTF-8
* current time: 2026-10-30 06:10:23 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘phylopred/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘phylopred’ version ‘0.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘phylopred’ can be installed ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [10s/11s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(phylopred)
  > test_check("phylopred")
  Saving _problems/test-pairwise-57.R
  [ FAIL 1 | WARN 3 | SKIP 0 | PASS 154 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-pairwise.R:57:3'): cluster_bootstrap_phylopred is reproducible and shaped correctly ──
  Expected `b1$draws` to be identical to `b2$draws`.
  Differences:
       actual            | expected                         
   [1] 19.5660685226351  - 19.5660685226170  [1]            
   [2] 19.5660685204044  | 19.5660685204044  [2]            
   [3] 18.1797741602255  - 18.1797741596240  [3]            
   [4] 18.1797741573744  - 18.1797741573943  [4]            
   [5] 18.1797741573994  | 18.1797741573994  [5]            
   [6] 18.1797741601242  - 18.1797741648233  [6]            
   [7] 19.5660685226366  - 19.5660685226247  [7]            
   [8] 19.5660685204225  - 19.5660685204145  [8]            
   [9] 19.5660685200133  - 19.5660685167369  [9]            
  [10] -24.5660685235090 | -24.5660685235090 [10]           
   ... ...                 ...               and 10 more ...
  
  
  [ FAIL 1 | WARN 3 | SKIP 0 | PASS 154 ]
  Error:
  ! Test failures.
  Execution halted
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/localhost/ripley/R/packages/tests-MKL/phylopred.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 0:45.68, 34.99 + 4.14