* using log directory ‘/data/localhost/ripley/R/packages/tests-MKL/phontrast.Rcheck’
* using R Under development (unstable) (2026-08-21 r90440)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)
    GNU Fortran (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)
* running under: Fedora Linux 44 (Server Edition)
* using session charset: UTF-8
* current time: 2026-08-22 05:41:01 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘phontrast/DESCRIPTION’ ... OK
* this is package ‘phontrast’ version ‘2.4.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘phontrast’ can be installed ... [9s/27s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [15s/40s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [14s/46s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [56s/117s]
 [57s/118s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(phontrast)
  > 
  > test_check("phontrast")
  Saving _problems/test-pillai-standardized-248.R
  [ FAIL 1 | WARN 6 | SKIP 0 | PASS 398 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-pillai-standardized.R:240:3'): definedness and design failures are explicit ──
  Error: Pillai trace failed. Check that each category has enough finite, non-collinear observations for the requested feature space. Original error: residuals have rank 1 < 2
  Backtrace:
       ▆
    1. ├─testthat::expect_error(...) at test-pillai-standardized.R:240:3
    2. │ └─testthat:::expect_condition_matching_(...)
    3. │   └─testthat:::quasi_capture(...)
    4. │     ├─testthat (local) .capture(...)
    5. │     │ └─base::withCallingHandlers(...)
    6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    7. └─phontrast::pillai_overlap(...)
    8.   └─base::tryCatch(...)
    9.     └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   10.       └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   11.         └─value[[3L]](cond)
  
  [ FAIL 1 | WARN 6 | SKIP 0 | PASS 398 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [43s/73s] OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/localhost/ripley/R/packages/tests-MKL/phontrast.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 6:53.58, 170.36 + 15.31