* using log directory ‘/data/gannet/ripley/R/packages/tests-MKL/pense.Rcheck’
* using R Under development (unstable) (2026-01-13 r89301)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
    GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
* running under: Fedora Linux 42 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘pense/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘pense’ version ‘2.5.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘pense’ can be installed ... [10m/13m] OK
* used C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
* checking C++ specification ... INFO
  specified C++17
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [31s/35s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [20s/20s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [13s/18s]
 [14s/19s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > if (require(testthat)) {
  +   library(pense)
  +   test_check("pense")
  + } else {
  +   warning("'pense' requires 'testthat' for tests.")
  + }
  Loading required package: testthat
  Loading required package: Matrix
  Saving _problems/test_discrete_response-15.R
  [ FAIL 1 | WARN 0 | SKIP 15 | PASS 405 ]
  
  ══ Skipped tests (15) ══════════════════════════════════════════════════════════
  • Environment variable `PENSE_TEST_FULL` not defined. (15):
    'test_mest_algorithm.R:7:3', 'test_mest_algorithm.R:44:3',
    'test_mest_algorithm.R:82:3', 'test_multiple_alpha.R:5:3',
    'test_multiple_alpha.R:53:3', 'test_multiple_alpha.R:114:3',
    'test_multiple_alpha.R:160:3', 'test_pense_algorithm.R:7:3',
    'test_pense_algorithm.R:41:3', 'test_pense_algorithm.R:76:3',
    'test_pense_algorithm.R:114:3', 'test_predict.R:5:3', 'test_predict.R:48:3',
    'test_ris_cv.R:5:3', 'test_ris_cv.R:47:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test_discrete_response.R:13:3'): Response with no variation ─────────
  Error in `matches[[i]][[j]]$similarity[[cv_ind]] <- corrs[best_match[[j]], j]`: replacement has length zero
  Backtrace:
      ▆
   1. ├─testthat::expect_warning(...) at test_discrete_response.R:13:3
   2. │ └─testthat:::quasi_capture(...)
   3. │   ├─testthat (local) .capture(...)
   4. │   │ └─base::withCallingHandlers(...)
   5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
   6. └─pense::pense_cv(x, y, alpha = 0.9, nlambda = 10, cv_k = 3)
   7.   └─pense:::.run_replicated_cv_ris(...)
  
  [ FAIL 1 | WARN 0 | SKIP 15 | PASS 405 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [23s/23s] OK
* checking PDF version of manual ... [10s/10s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/gannet/ripley/R/packages/tests-MKL/pense.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 16:45.80, 756.42 + 42.89